Singularity_approach_4

Bootstrap: docker
From: mcr.microsoft.com/devcontainers/anaconda
# From: pnnlmiscscripts/anaconda:latest


%post
    # From https://github.com/brucemoran/Singularity/blob/8eb44591284ffb29056d234c47bf8b1473637805/shub/bases/recipe.CentOs7-R_3.5.2#L21
    echo 'export LANG=en_US.UTF-8 LANGUAGE=C LC_ALL=C LC_CTYPE=C LC_COLLATE=C  LC_TIME=C LC_MONETARY=C LC_PAPER=C LC_MEASUREMENT=C' >> $SINGULARITY_ENVIRONMENT

    conda install hcc::cellranger


%runscript
python "$@"