Megan6

for i in *fasta;do diamond blastx -p 50 -d ~/softwares/ncbi_database/ncbi_nr/nr/diamond.dmnd -q $i -f 100 -o ${i/.fasta};done
sudo /opt/megan/tools/daa2rma --in ../Mor_Project_129/test2.daa --out testmm.rma -mdb /home/vsingh/softwares/ncbi_database/megan-map-Oct2019.db
sudo /opt/megan/tools/rma2info --in test.rma --class2count Taxonomy --paths --names > tt
sudo /opt/megan/tools/rma2info --in test.rma --class2count Taxonomy --paths --names -r2c Taxonomy > tt

sudo /opt/megan/tools/daa2rma -lg -top 10 -supp 0 -sup 0 -alg longReads --in Co_Assembly.daa --out Co_Assembly.daa.rma6 -mdb /home/vsingh/softwares/ncbi_database/megan-map-Oct2019.db