Version 0.1.7 - update dependencies

Author: michellejw

.idea/misc.xml

@@ -1,3 +1,7 @@
+## [0.1.7] - 2024-10-19
+### Changed
+- Updated dependencies to include h5netcdf, h5py, pyarrow, and netcdf4
+
 ## [0.1.4] - 2024-09-28
 ### Added
 - Simpler method for accessing data using m2m yaml summary file (see 

CHANGELOG.md

@@ -224,7 +224,7 @@
     "# Get metadata for a specific data (printing just \n",
     "# a subset because there's a lot of metadata)\n",
     "metadata = request_manager.get_metadata(site, node, sensor)\n",
-    "print(metadata['parameters'][0])"
+    "print(metadata['parameters'][1])"
    ],
    "outputs": [
     {
@@ -323,8 +323,8 @@
   {
    "metadata": {
     "ExecuteTime": {
-     "end_time": "2024-09-28T23:35:40.103969Z",
-     "start_time": "2024-09-28T23:35:39.850101Z"
+     "end_time": "2024-10-14T16:26:32.506549Z",
+     "start_time": "2024-10-14T16:26:32.490202Z"
     }
    },
    "cell_type": "code",
@@ -335,45 +335,43 @@
    "id": "720d509d7d2ae56d",
    "outputs": [
     {
-     "data": {
-      "text/plain": [
-       "dict_keys(['@class', 'lastModifiedTimestamp', 'dataSource', 'eventName', 'eventType', 'eventStartTime', 'eventStopTime', 'notes', 'eventId', 'assetUid', 'deployCruiseInfo', 'recoverCruiseInfo', 'deployedBy', 'recoveredBy', 'referenceDesignator', 'deploymentNumber', 'versionNumber', 'inductiveId', 'waterDepth', 'mooring', 'node', 'sensor', 'location', 'editPhase', 'ingestInfo', 'tense'])"
-      ]
-     },
-     "execution_count": 25,
-     "metadata": {},
-     "output_type": "execute_result"
+     "ename": "NameError",
+     "evalue": "name 'request_manager' is not defined",
+     "output_type": "error",
+     "traceback": [
+      "\u001B[0;31m---------------------------------------------------------------------------\u001B[0m",
+      "\u001B[0;31mNameError\u001B[0m                                 Traceback (most recent call last)",
+      "Cell \u001B[0;32mIn[4], line 1\u001B[0m\n\u001B[0;32m----> 1\u001B[0m sensor_info \u001B[38;5;241m=\u001B[39m \u001B[43mrequest_manager\u001B[49m\u001B[38;5;241m.\u001B[39mget_sensor_information(site, node, sensor, \u001B[38;5;241m1\u001B[39m)[\u001B[38;5;241m0\u001B[39m]\n\u001B[1;32m      2\u001B[0m sensor_info\u001B[38;5;241m.\u001B[39mkeys()\n",
+      "\u001B[0;31mNameError\u001B[0m: name 'request_manager' is not defined"
+     ]
     }
    ],
-   "execution_count": 25
+   "execution_count": 4
   },
   {
    "metadata": {
     "ExecuteTime": {
-     "end_time": "2024-09-28T23:37:33.501064Z",
-     "start_time": "2024-09-28T23:37:33.493973Z"
+     "end_time": "2024-10-14T16:26:41.816915Z",
+     "start_time": "2024-10-14T16:26:41.803135Z"
     }
    },
    "cell_type": "code",
    "source": "sensor_info['location']",
    "id": "57e8dfe6e1d5b639",
    "outputs": [
     {
-     "data": {
-      "text/plain": [
-       "{'latitude': 44.63833,\n",
-       " 'longitude': -124.30388,\n",
-       " 'depth': 0.0,\n",
-       " 'orbitRadius': 250.0,\n",
-       " 'location': [-124.30388, 44.63833]}"
-      ]
-     },
-     "execution_count": 34,
-     "metadata": {},
-     "output_type": "execute_result"
+     "ename": "NameError",
+     "evalue": "name 'sensor_info' is not defined",
+     "output_type": "error",
+     "traceback": [
+      "\u001B[0;31m---------------------------------------------------------------------------\u001B[0m",
+      "\u001B[0;31mNameError\u001B[0m                                 Traceback (most recent call last)",
+      "Cell \u001B[0;32mIn[5], line 1\u001B[0m\n\u001B[0;32m----> 1\u001B[0m \u001B[43msensor_info\u001B[49m[\u001B[38;5;124m'\u001B[39m\u001B[38;5;124mlocation\u001B[39m\u001B[38;5;124m'\u001B[39m]\n",
+      "\u001B[0;31mNameError\u001B[0m: name 'sensor_info' is not defined"
+     ]
     }
    ],
-   "execution_count": 34
+   "execution_count": 5
   },
   {
    "metadata": {

notebooks/01-getting_started.ipynb

@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
 
 [project]
 name = "yooink"
-version = "0.1.6"
+version = "0.1.7"
 authors = [
   { name="Michelle Weirathmueller", email="[email protected]" },
 ]
@@ -26,10 +26,14 @@ dependencies = [
     "python_dateutil==2.9.0.post0",
     "pytz==2024.2",
     "PyYAML==6.0.2",
-    "requests==2.32.3",  # Updated to lowercase
+    "requests==2.32.3",
     "tomlkit==0.13.2",
     "tqdm==4.66.5",
     "xarray==2024.9.0",
+    "pyarrow",
+    "h5py",
+    "netcdf4",
+    "h5netcdf"
 ]
 
 [project.urls]

notebooks/03-simple-get-data.ipynb

@@ -5,7 +5,10 @@ pandas==2.2.3
 python_dateutil==2.9.0.post0
 pytz==2024.2
 PyYAML==6.0.2
-PyYAML==6.0.2
 Requests==2.32.3
 tqdm==4.66.5
-xarray==2024.9.0
+xarray
+pyarrow
+h5py
+netcdf4
+h5netcdf

pyproject.toml

@@ -9,16 +9,21 @@
 from .data.data_manager import DataManager
 from .api.client import APIClient, M2MInterface
 from .request.request_manager import RequestManager
-from .ooi_data_summary import ooi_data_summary
+from .ooi_data_summary import ooi_data_summary, ooi_data_full
+from .request.data_fetcher import DataFetcher
+from .utils import ooi_seconds_to_datetime
 
 # Define __all__ to control what gets imported with "from yooink import *"
 __all__ = [
-    'api',
-    'request',
-    'data',
-    'APIClient',
-    'RequestManager',
-    'DataManager',
-    'M2MInterface',
-    'ooi_data_summary'
+    "api",
+    "request",
+    "data",
+    "APIClient",
+    "RequestManager",
+    "DataManager",
+    "M2MInterface",
+    "ooi_data_summary",
+    "ooi_data_full",
+    "DataFetcher",
+    "ooi_seconds_to_datetime",
 ]

requirements.txt

@@ -1,7 +1,10 @@
 import pandas as pd
 import importlib.resources as pkg_resources
 
-# Load the CSV into a pandas DataFrame as soon as the module is imported
-with pkg_resources.open_text(
-        'yooink.data', 'data_combinations.csv') as csv_file:
+# # Load the CSV into a pandas DataFrame
+with pkg_resources.open_text("yooink.data", "data_combinations.csv") as csv_file:
     ooi_data_summary = pd.read_csv(csv_file)
+
+# Load the parquet file into a pandas Dataframe
+with pkg_resources.open_binary("yooink.data", "ooi_data.parquet") as parquet_file:
+    ooi_data_full = pd.read_parquet(parquet_file)