NAMESPACE

# Generated by roxygen2: do not edit by hand

S3method("[",compareClusterResult)
S3method("[[",compareClusterResult)
S3method(arrange,compareClusterResult)
S3method(arrange,enrichResult)
S3method(arrange,gseaResult)
S3method(as.data.frame,compareClusterResult)
S3method(as.data.frame,groupGOResult)
S3method(dim,compareClusterResult)
S3method(filter,compareClusterResult)
S3method(filter,enrichResult)
S3method(filter,gseaResult)
S3method(geneID,groupGOResult)
S3method(geneInCategory,groupGOResult)
S3method(group_by,compareClusterResult)
S3method(group_by,enrichResult)
S3method(group_by,gseaResult)
S3method(head,compareClusterResult)
S3method(mutate,compareClusterResult)
S3method(mutate,enrichResult)
S3method(mutate,gseaResult)
S3method(rename,compareClusterResult)
S3method(rename,enrichResult)
S3method(rename,gseaResult)
S3method(select,compareClusterResult)
S3method(select,enrichResult)
S3method(select,gseaResult)
S3method(slice,compareClusterResult)
S3method(slice,enrichResult)
S3method(slice,gseaResult)
S3method(summarise,compareClusterResult)
S3method(summarise,enrichResult)
S3method(summarise,gseaResult)
S3method(tail,compareClusterResult)
export("%<>%")
export("%>%")
export(GSEA)
export(Gff2GeneTable)
export(append_kegg_category)
export(arrange)
export(bitr)
export(bitr_kegg)
export(browseKEGG)
export(buildGOmap)
export(cnetplot)
export(compareCluster)
export(dotplot)
export(download_KEGG)
export(dropGO)
export(emapplot)
export(enrichDAVID)
export(enrichDO)
export(enrichGO)
export(enrichKEGG)
export(enrichMKEGG)
export(enrichPC)
export(enrichWP)
export(enricher)
export(filter)
export(geneID)
export(geneInCategory)
export(getPPI)
export(getTaxID)
export(getTaxInfo)
export(get_wp_organisms)
export(go2ont)
export(go2term)
export(gofilter)
export(goplot)
export(groupGO)
export(group_by)
export(gseDO)
export(gseGO)
export(gseKEGG)
export(gseMKEGG)
export(gsePC)
export(gseWP)
export(gseaplot)
export(gsfilter)
export(gson_GO)
export(gson_KEGG)
export(gson_KEGG_mapper)
export(gson_WP)
export(heatplot)
export(idType)
export(ko2name)
export(merge_result)
export(mutate)
export(n)
export(plotGOgraph)
export(read.blast2go)
export(read.gaf)
export(read.gmt)
export(read.gmt.pc)
export(read.gmt.wp)
export(rename)
export(ridgeplot)
export(search_kegg_organism)
export(select)
export(setReadable)
export(slice)
export(summarise)
export(uniprot_get)
exportClasses(groupGOResult)
exportMethods(simplify)
importClassesFrom(DOSE,compareClusterResult)
importClassesFrom(DOSE,enrichResult)
importClassesFrom(DOSE,gseaResult)
importClassesFrom(methods,data.frame)
importFrom(AnnotationDbi,Ontology)
importFrom(AnnotationDbi,as.list)
importFrom(AnnotationDbi,keys)
importFrom(AnnotationDbi,keytypes)
importFrom(AnnotationDbi,toTable)
importFrom(DOSE,enrichDO)
importFrom(DOSE,geneID)
importFrom(DOSE,geneInCategory)
importFrom(DOSE,gseDO)
importFrom(DOSE,gsfilter)
importFrom(DOSE,setReadable)
importFrom(GO.db,GOBPCHILDREN)
importFrom(GO.db,GOCCCHILDREN)
importFrom(GO.db,GOMFCHILDREN)
importFrom(GO.db,GOTERM)
importFrom(GOSemSim,buildGOmap)
importFrom(GOSemSim,godata)
importFrom(GOSemSim,load_OrgDb)
importFrom(GOSemSim,mgoSim)
importFrom(GOSemSim,read.blast2go)
importFrom(GOSemSim,read.gaf)
importFrom(dplyr,arrange)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,mutate)
importFrom(dplyr,n)
importFrom(dplyr,rename)
importFrom(dplyr,select)
importFrom(dplyr,slice)
importFrom(dplyr,summarise)
importFrom(enrichplot,cnetplot)
importFrom(enrichplot,dotplot)
importFrom(enrichplot,emapplot)
importFrom(enrichplot,goplot)
importFrom(enrichplot,gseaplot)
importFrom(enrichplot,heatplot)
importFrom(enrichplot,ridgeplot)
importFrom(gson,gson)
importFrom(gson,read.gmt)
importFrom(gson,read.gmt.wp)
importFrom(magrittr,"%<>%")
importFrom(magrittr,"%>%")
importFrom(methods,is)
importFrom(methods,new)
importFrom(plyr,dlply)
importFrom(plyr,ldply)
importFrom(plyr,llply)
importFrom(qvalue,qvalue)
importFrom(rlang,"%||%")
importFrom(rlang,.data)
importFrom(rlang,check_installed)
importFrom(rlang,quos)
importFrom(stats,formula)
importFrom(stats,setNames)
importFrom(tidyr,gather)
importFrom(tidyr,separate)
importFrom(utils,browseURL)
importFrom(utils,citation)
importFrom(utils,head)
importFrom(utils,installed.packages)
importFrom(utils,modifyList)
importFrom(utils,packageDescription)
importFrom(utils,read.table)
importFrom(utils,stack)
importFrom(utils,str)
importFrom(utils,tail)
importFrom(yulab.utils,get_fun_from_pkg)
importFrom(yulab.utils,is.installed)
importFrom(yulab.utils,yread)
importFrom(yulab.utils,yread_tsv)
importMethodsFrom(AnnotationDbi,mappedkeys)
importMethodsFrom(AnnotationDbi,mget)
importMethodsFrom(DOSE,show)
importMethodsFrom(DOSE,summary)