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Dear develop team,
I found that the the ont = "ALL" is not working in the enrichGO()
GO_up <- enrichGO(gene = up_genes$ENTREZID,
universe = names(all_gene_vector),
OrgDb = org.Hs.eg.db,
ont = "ALL",
pAdjustMethod = "BH",
readable = TRUE)
Error in get("GO2ONT", envir = GO_DATA) : object 'GO2ONT' not found
The other ont = "BP", "CC", or "MF" is working, but "ALL" is not.
Please help!
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