Gatk3 Error

[C-Ickes]

Thanks for developing a pipeline which is supported by docker directly.
Sadly, I got an error while downloading the image.

failed to register layer: Error processing tar file(exit status 1): lchown /tmp/gatk3: invalid argument

[alexcoppe]

Hi, have you attempted to download it from Docker Hub using the following command:

docker pull alexcoppe/iwhale

It worked for me.

[C-Ickes]

Hi, I tried to pull the image now on an other system which resulted in some more information:

docker pull alexcoppe/iwhale
Using default tag: latest
latest: Pulling from alexcoppe/iwhale
f7277927d38a: Pull complete
8d3eac894db4: Pull complete
edf72af6d627: Pull complete
3e4f86211d23: Pull complete
f723cbe9e13e: Pull complete
925ea9d09f02: Pull complete
257ad40b7009: Pull complete
6d72b8bd5809: Pull complete
9283b7e8b748: Pull complete
27107d93da4a: Pull complete
58f1334db2c4: Pull complete
5c7fe1e32018: Pull complete
a330c127cea7: Pull complete
e5db4a2aaa34: Pull complete
bc969e717fe6: Pull complete
0f58d513c86f: Pull complete
256992e148c0: Pull complete
60c8723012af: Pull complete
dd30ce77d784: Pull complete
ab24de4815f5: Pull complete
28c48f4a7aa1: Pull complete
75725e105650: Extracting 948.7MB/948.7MB
c387e9c9a897: Download complete
failed to register layer: failed to Lchown "/tmp/gatk3" for UID 1559974988, GID 1594166068 (try increasing the number of subordinate IDs in /etc/subuid and /etc/subgid): lchown /tmp/gatk3: invalid argument

Other docker images also experienced an issue with massive subordinates.
(see moby/moby#45757)

However, I assume this will not remove the invalid argument problem.

system

Ubuntu 22.04