CITATION.cff

cff-version: 1.2.0
abstract: >-
  scribl (Semantic Capture of Relationships in Biological Literature) is a
  Python software pipeline and API that transforms a Zotero literature database
  with entries annotated with tags in the **scribl** language to create a graph
  data structure, suitable for import into a graph database platform, such as
  Neo4j or Python's NetworkX. The scribl language was designed for the curation
  from scientific articles, to capture the relationships between the various
  biological agents and the processes that they describe in a connected network.
authors:
  - family-names: Webster
    given-names: Gordon
    affiliation: Amber Biology LLC
    orcid: https://orcid.org/0009-0009-2862-0467
  - family-names: Lancaster
    given-names: Alexander K.
    orcid: https://orcid.org/0000-0002-0002-9263
    affiliation: >-
      Amber Biology LLC and Institute for Globally Distributed Open Research and
      Education (IGDORE)
title: >-
  scribl: A system for the semantic capture of relationships in biological
  literature
url: https://amberbiology.com
repository-code: https://github.com/amberbiology/scribl
type: software
keywords:
  - systems biology
  - network biology
  - literature mining
  - bioinformatics
  - computational biology
license: AGPL-3.0-or-later
version: v0.8.1
doi: 10.5281/zenodo.13963648
message: >-
  If you use this software, please cite our article in the Journal of Open
  Source Software.
preferred-citation:
  authors:
    - family-names: Webster
      given-names: Gordon D.
      orcid: https://orcid.org/0009-0009-2862-0467
    - family-names: Lancaster
      given-names: Alexander K.
      orcid: https://orcid.org/0000-0002-0002-9263
  date-published: 2024-07-17
  doi: 10.21105/joss.06645
  issn: 2475-9066
  issue: 99
  journal: Journal of Open Source Software
  publisher:
    name: Open Journals
  start: 6645
  title: >-
    scribl: A system for the semantic capture of relationships in biological
    literature
  type: article
  url: https://joss.theoj.org/papers/10.21105/joss.06645
  volume: 9