[ZEPPELIN-6163] HBase interpreter supports hbase-2.x

Author: paul8263

docs/interpreter/hbase.md

@@ -28,19 +28,7 @@ limitations under the License.
 To get start with HBase, please see [HBase Quickstart](https://hbase.apache.org/book.html#quickstart).
 
 ## HBase release supported
-By default, Zeppelin is built against HBase 1.0.x releases. To work with HBase 1.1.x releases, use the following build command:
-
-```bash
-# HBase 1.1.4
-./mvnw clean package -DskipTests -Phadoop-2.6 -Dhadoop.version=2.6.0 -P build-distr -Dhbase.hbase.version=1.1.4 -Dhbase.hadoop.version=2.6.0
-```
-
-To work with HBase 1.2.0+, use the following build command:
-
-```bash
-# HBase 1.2.0
-./mvnw clean package -DskipTests -Phadoop-2.6 -Dhadoop.version=2.6.0 -P build-distr -Dhbase.hbase.version=1.2.0 -Dhbase.hadoop.version=2.6.0
-```
+Zeppelin is built against HBase 1.x and 2.x releases. 
 
 ## Configuration
 
@@ -55,16 +43,6 @@ To work with HBase 1.2.0+, use the following build command:
     <td>/usr/lib/hbase</td>
     <td>Installation directory of HBase, defaults to HBASE_HOME in environment</td>
   </tr>
-  <tr>
-    <td>hbase.ruby.sources</td>
-    <td>lib/ruby</td>
-    <td>Path to Ruby scripts relative to 'hbase.home'</td>
-  </tr>
-  <tr>
-    <td>zeppelin.hbase.test.mode</td>
-    <td>false</td>
-    <td>Disable checks for unit and manual tests</td>
-  </tr>
 </table>
 
 If you want to connect to HBase running on a cluster, you'll need to follow the next step.

hbase/pom.xml

@@ -33,14 +33,16 @@
   <properties>
     <!--library versions-->
     <interpreter.name>hbase</interpreter.name>
-    <jruby.version>1.6.8</jruby.version>
   </properties>
 
   <dependencies>
     <dependency>
-      <groupId>org.jruby</groupId>
-      <artifactId>jruby-complete</artifactId>
-      <version>${jruby.version}</version>
+      <groupId>commons-io</groupId>
+      <artifactId>commons-io</artifactId>
+    </dependency>
+    <dependency>
+      <groupId>org.apache.commons</groupId>
+      <artifactId>commons-lang3</artifactId>
     </dependency>
   </dependencies>
 

hbase/src/main/java/org/apache/zeppelin/hbase/HbaseInterpreter.java

@@ -14,118 +14,131 @@
 
 package org.apache.zeppelin.hbase;
 
-import org.jruby.embed.LocalContextScope;
-import org.jruby.embed.ScriptingContainer;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
-
+import java.io.ByteArrayOutputStream;
 import java.io.File;
-import java.io.FileInputStream;
 import java.io.IOException;
-import java.io.StringWriter;
-import java.nio.file.Path;
+import java.nio.file.Files;
 import java.nio.file.Paths;
-import java.util.List;
+import java.util.HashMap;
+import java.util.Map;
 import java.util.Properties;
 
+import org.apache.commons.exec.CommandLine;
+import org.apache.commons.exec.DefaultExecutor;
+import org.apache.commons.exec.ExecuteException;
+import org.apache.commons.exec.ExecuteWatchdog;
+import org.apache.commons.exec.Executor;
+import org.apache.commons.exec.PumpStreamHandler;
+import org.apache.commons.io.FileUtils;
+import org.apache.commons.lang3.StringUtils;
 import org.apache.zeppelin.interpreter.Interpreter;
 import org.apache.zeppelin.interpreter.InterpreterContext;
 import org.apache.zeppelin.interpreter.InterpreterException;
 import org.apache.zeppelin.interpreter.InterpreterResult;
-import org.apache.zeppelin.interpreter.thrift.InterpreterCompletion;
 import org.apache.zeppelin.scheduler.Scheduler;
 import org.apache.zeppelin.scheduler.SchedulerFactory;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
 
 /**
- * Support for HBase Shell. All the commands documented here
- * http://hbase.apache.org/book.html#shell is supported.
- *
- * Requirements:
- * HBase Shell should be installed on the same machine. To be more specific, the following dir.
- * should be available: https://github.com/apache/hbase/tree/master/hbase-shell/src/main/ruby
- * HBase Shell should be able to connect to the HBase cluster from terminal. This makes sure
- * that the client is configured properly.
- *
- * The interpreter takes 3 config parameters:
- * hbase.home: Root directory where HBase is installed. Default is /usr/lib/hbase/
- * hbase.ruby.sources: Dir where shell ruby code is installed.
- *                          Path is relative to hbase.home. Default: lib/ruby
- * zeppelin.hbase.test.mode: (Testing only) Disable checks for unit and manual tests. Default: false
+ * HBase interpreter. It uses the hbase shell to interpret the commands.
  */
 public class HbaseInterpreter extends Interpreter {
+  private static final Logger LOGGER = LoggerFactory.getLogger(HbaseInterpreter.class);
+
   public static final String HBASE_HOME = "hbase.home";
-  public static final String HBASE_RUBY_SRC = "hbase.ruby.sources";
-  public static final String HBASE_TEST_MODE = "zeppelin.hbase.test.mode";
 
-  private static final Logger LOGGER = LoggerFactory.getLogger(HbaseInterpreter.class);
-  private ScriptingContainer scriptingContainer;
+  private Map<String, Executor> runningProcesses = new HashMap<>();
 
-  private StringWriter writer;
+  private Map<String, File> tempFiles = new HashMap<>();
 
-  public HbaseInterpreter(Properties property) {
-    super(property);
+  private static final int SIGTERM_CODE = 143;
+
+  private long commandTimeout = 60000;
+
+  public HbaseInterpreter(Properties properties) {
+    super(properties);
   }
 
   @Override
   public void open() throws InterpreterException {
-    this.scriptingContainer  = new ScriptingContainer(LocalContextScope.SINGLETON);
-    this.writer = new StringWriter();
-    scriptingContainer.setOutput(this.writer);
-
-    if (!Boolean.parseBoolean(getProperty(HBASE_TEST_MODE))) {
-      String hbaseHome = getProperty(HBASE_HOME);
-      String rubySrc = getProperty(HBASE_RUBY_SRC);
-      Path absRubySrc = Paths.get(hbaseHome, rubySrc).toAbsolutePath();
-
-      LOGGER.info("Home:" + hbaseHome);
-      LOGGER.info("Ruby Src:" + rubySrc);
-
-      File f = absRubySrc.toFile();
-      if (!f.exists() || !f.isDirectory()) {
-        throw new InterpreterException("HBase ruby sources is not available at '" + absRubySrc
-            + "'");
-      }
-
-      LOGGER.info("Absolute Ruby Source:" + absRubySrc.toString());
-      // hirb.rb:41 requires the following system properties to be set.
-      Properties sysProps = System.getProperties();
-      sysProps.setProperty(HBASE_RUBY_SRC, absRubySrc.toString());
-
-      Path absHirbPath = Paths.get(hbaseHome, "bin/hirb.rb");
-      try {
-        FileInputStream fis = new FileInputStream(absHirbPath.toFile());
-        this.scriptingContainer.runScriptlet(fis, "hirb.rb");
-        fis.close();
-      } catch (IOException e) {
-        throw new InterpreterException(e.getCause());
-      }
-    }
+    // Do nothing
   }
 
   @Override
   public void close() {
-    if (this.scriptingContainer != null) {
-      this.scriptingContainer.terminate();
-    }
+    runningProcesses.clear();
+    runningProcesses = null;
+    tempFiles.clear();
+    tempFiles = null;
   }
 
   @Override
-  public InterpreterResult interpret(String cmd, InterpreterContext interpreterContext) {
+  public InterpreterResult interpret(String st, InterpreterContext context) {
+    LOGGER.debug("Run HBase shell script: {}", st);
+
+    if (StringUtils.isEmpty(st)) {
+      return new InterpreterResult(InterpreterResult.Code.SUCCESS);
+    }
+
+    String paragraphId = context.getParagraphId();
+    final File scriptFile;
     try {
-      LOGGER.info(cmd);
-      this.writer.getBuffer().setLength(0);
-      this.scriptingContainer.runScriptlet(cmd);
-      this.writer.flush();
-      LOGGER.debug(writer.toString());
-      return new InterpreterResult(InterpreterResult.Code.SUCCESS, writer.getBuffer().toString());
-    } catch (Throwable t) {
-      LOGGER.error("Can not run '" + cmd + "'", t);
-      return new InterpreterResult(InterpreterResult.Code.ERROR, t.getMessage());
+      // Write script in a temporary file
+      // The script is enriched with extensions
+      scriptFile = createTempFile(paragraphId);
+      FileUtils.write(scriptFile, st + "\nexit");
+    } catch (IOException e) {
+      LOGGER.error("Can not write script in temp file", e);
+      return new InterpreterResult(InterpreterResult.Code.ERROR, e.getMessage());
+    }
+
+    InterpreterResult result = new InterpreterResult(InterpreterResult.Code.SUCCESS);
+
+    final DefaultExecutor executor = new DefaultExecutor();
+    final ByteArrayOutputStream errorStream = new ByteArrayOutputStream();
+
+    executor.setStreamHandler(new PumpStreamHandler(context.out, errorStream));
+    executor.setWatchdog(new ExecuteWatchdog(commandTimeout));
+
+    String hbaseCmdPath = Paths.get(getProperty(HBASE_HOME), "bin", "hbase").toString();
+    final CommandLine cmdLine = CommandLine.parse(hbaseCmdPath);
+    cmdLine.addArgument("shell", false);
+    cmdLine.addArgument(scriptFile.getAbsolutePath(), false);
+
+    try {
+      executor.execute(cmdLine);
+      runningProcesses.put(paragraphId, executor);
+    } catch (ExecuteException e) {
+      LOGGER.error("Can not run script in paragraph {}", paragraphId, e);
+
+      final int exitValue = e.getExitValue();
+      InterpreterResult.Code code = InterpreterResult.Code.ERROR;
+      String msg = errorStream.toString();
+
+      if (exitValue == SIGTERM_CODE) {
+        code = InterpreterResult.Code.INCOMPLETE;
+        msg = msg + "Paragraph received a SIGTERM.\n";
+        LOGGER.info("The paragraph {} stopped executing: {}", paragraphId, msg);
+      }
+
+      msg += "ExitValue: " + exitValue;
+      result = new InterpreterResult(code, msg);
+    } catch (IOException e) {
+      LOGGER.error("Can not run script in paragraph {}", paragraphId, e);
+      result = new InterpreterResult(InterpreterResult.Code.ERROR, e.getMessage());
+    } finally {
+      deleteTempFile(paragraphId);
+      stopProcess(paragraphId);
     }
+    return result;
   }
 
   @Override
-  public void cancel(InterpreterContext context) {}
+  public void cancel(InterpreterContext context) {
+    stopProcess(context.getParagraphId());
+    deleteTempFile(context.getParagraphId());
+  }
 
   @Override
   public FormType getFormType() {
@@ -143,30 +156,26 @@ public Scheduler getScheduler() {
         HbaseInterpreter.class.getName() + this.hashCode());
   }
 
-  @Override
-  public List<InterpreterCompletion> completion(String buf, int cursor,
-      InterpreterContext interpreterContext) {
-    return null;
+  private void stopProcess(String paragraphId) {
+    if (runningProcesses.containsKey(paragraphId)) {
+      final Executor executor = runningProcesses.get(paragraphId);
+      final ExecuteWatchdog watchdog = executor.getWatchdog();
+      watchdog.destroyProcess();
+      runningProcesses.remove(paragraphId);
+    }
   }
 
-  private static String getSystemDefault(
-      String envName,
-      String propertyName,
-      String defaultValue) {
-
-    if (envName != null && !envName.isEmpty()) {
-      String envValue = System.getenv().get(envName);
-      if (envValue != null) {
-        return envValue;
-      }
-    }
+  private File createTempFile(String paragraphId) throws IOException {
+    File temp = Files.createTempFile(
+            Paths.get(System.getProperty("java.io.tmpdir"), "zeppelin-hbase-scripts"), paragraphId, ".txt").toFile();
+    tempFiles.put(paragraphId, temp);
+    return temp;
+  }
 
-    if (propertyName != null && !propertyName.isEmpty()) {
-      String propValue = System.getProperty(propertyName);
-      if (propValue != null) {
-        return propValue;
-      }
+  private void deleteTempFile(String paragraphId) {
+    File tmpFile = tempFiles.remove(paragraphId);
+    if (null != tmpFile) {
+      FileUtils.deleteQuietly(tmpFile);
     }
-    return defaultValue;
   }
 }

hbase/src/main/resources/interpreter-setting.json

@@ -10,18 +10,6 @@
         "defaultValue": "/usr/lib/hbase/",
         "description": "Installation directory of HBase",
         "type": "string"
-      },
-      "hbase.ruby.sources": {
-        "propertyName": "hbase.ruby.sources",
-        "defaultValue": "lib/ruby",
-        "description": "Path to Ruby scripts relative to 'hbase.home'",
-        "type": "string"
-      },
-      "zeppelin.hbase.test.mode": {
-        "propertyName": "zeppelin.hbase.test.mode",
-        "defaultValue": false,
-        "description": "Disable checks for unit and manual tests",
-        "type": "checkbox"
       }
     },
     "editor": {

hbase/src/test/java/org/apache/zeppelin/hbase/HbaseInterpreterTest.java

@@ -14,16 +14,14 @@
 
 package org.apache.zeppelin.hbase;
 
-import static org.junit.jupiter.api.Assertions.assertEquals;
-import static org.junit.jupiter.api.Assertions.assertNotNull;
-
-import java.util.Properties;
-
 import org.apache.zeppelin.interpreter.InterpreterException;
-import org.apache.zeppelin.interpreter.InterpreterResult;
 import org.junit.jupiter.api.BeforeAll;
 import org.junit.jupiter.api.Test;
 
+import java.util.Properties;
+
+import static org.junit.jupiter.api.Assertions.assertNotNull;
+
 /**
  * Tests for HBase Interpreter.
  */
@@ -34,8 +32,6 @@ public class HbaseInterpreterTest {
   public static void setUp() throws NullPointerException, InterpreterException {
     Properties properties = new Properties();
     properties.put("hbase.home", "");
-    properties.put("hbase.ruby.sources", "");
-    properties.put("zeppelin.hbase.test.mode", "true");
 
     hbaseInterpreter = new HbaseInterpreter(properties);
     hbaseInterpreter.open();
@@ -45,28 +41,4 @@ public static void setUp() throws NullPointerException, InterpreterException {
   void newObject() {
     assertNotNull(hbaseInterpreter);
   }
-
-  @Test
-  void putsTest() {
-    InterpreterResult result = hbaseInterpreter.interpret("puts \"Hello World\"", null);
-    assertEquals(InterpreterResult.Code.SUCCESS, result.code());
-    assertEquals(InterpreterResult.Type.TEXT, result.message().get(0).getType());
-    assertEquals("Hello World\n", result.message().get(0).getData());
-  }
-
-  public void putsLoadPath() {
-    InterpreterResult result = hbaseInterpreter.interpret(
-            "require 'two_power'; puts twoToThePowerOf(4)", null);
-    assertEquals(InterpreterResult.Code.SUCCESS, result.code());
-    assertEquals(InterpreterResult.Type.TEXT, result.message().get(0).getType());
-    assertEquals("16\n", result.message().get(0).getData());
-  }
-
-  @Test
-  void testException() {
-    InterpreterResult result = hbaseInterpreter.interpret("plot practical joke", null);
-    assertEquals(InterpreterResult.Code.ERROR, result.code());
-    assertEquals("(NameError) undefined local variable or method `joke' for main:Object",
-            result.message().get(0).getData());
-  }
 }