@@ -262,54 +262,3 @@ def test_preprocess(adata):
262262 ax = dyn .pl .highest_frac_genes (adata )
263263 assert isinstance (ax , plt .Axes )
264264
265-
266- def test_time_series_plot (adata ):
267- import seaborn as sns
268-
269- adata = adata .copy ()
270- adata .uns ["umap_fit" ]["umap_kwargs" ]["max_iter" ] = None
271- progenitor = adata .obs_names [adata .obs .Cell_type .isin (["Proliferating Progenitor" , "Pigment Progenitor" ])]
272-
273- dyn .pd .fate (
274- adata ,
275- basis = "umap" ,
276- init_cells = progenitor ,
277- interpolation_num = 25 ,
278- direction = "forward" ,
279- inverse_transform = True ,
280- average = False ,
281- )
282-
283- ax = dyn .pl .kinetic_curves (adata , basis = "umap" , genes = adata .var_names [:4 ], save_show_or_return = "return" )
284- assert isinstance (ax , sns .axisgrid .FacetGrid )
285- ax = dyn .pl .kinetic_heatmap (adata , basis = "umap" , genes = adata .var_names [:4 ], save_show_or_return = "return" )
286- assert isinstance (ax , sns .matrix .ClusterGrid )
287-
288- dyn .tl .order_cells (adata , basis = "umap" )
289- progenitor = adata .obs_names [adata .obs .Cell_type .isin (["Proliferating Progenitor" , "Pigment Progenitor" ])]
290-
291- dyn .vf .jacobian (
292- adata , basis = "umap" , regulators = ["ptmaa" , "rpl5b" ], effectors = ["ptmaa" , "rpl5b" ], cell_idx = progenitor
293- )
294- ax = dyn .pl .jacobian_kinetics (
295- adata ,
296- basis = "umap" ,
297- genes = adata .var_names [:4 ],
298- regulators = ["ptmaa" , "rpl5b" ],
299- effectors = ["ptmaa" , "rpl5b" ],
300- tkey = "Pseudotime" ,
301- save_show_or_return = "return" ,
302- )
303- assert isinstance (ax , sns .matrix .ClusterGrid )
304-
305- dyn .vf .sensitivity (adata , basis = "umap" , regulators = ["rpl5b" ], effectors = ["ptmaa" ], cell_idx = progenitor )
306- ax = dyn .pl .sensitivity_kinetics (
307- adata ,
308- basis = "umap" ,
309- genes = adata .var_names [:4 ],
310- regulators = ["rpl5b" ],
311- effectors = ["ptmaa" ],
312- tkey = "Pseudotime" ,
313- save_show_or_return = "return" ,
314- )
315- assert isinstance (ax , sns .matrix .ClusterGrid )
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