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Remove deprecated test_time_series_plot function from test_pl.py to streamline test suite
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tests/test_pl.py

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@@ -262,54 +262,3 @@ def test_preprocess(adata):
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ax = dyn.pl.highest_frac_genes(adata)
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assert isinstance(ax, plt.Axes)
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def test_time_series_plot(adata):
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import seaborn as sns
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adata = adata.copy()
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adata.uns["umap_fit"]["umap_kwargs"]["max_iter"] = None
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progenitor = adata.obs_names[adata.obs.Cell_type.isin(["Proliferating Progenitor", "Pigment Progenitor"])]
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dyn.pd.fate(
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adata,
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basis="umap",
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init_cells=progenitor,
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interpolation_num=25,
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direction="forward",
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inverse_transform=True,
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average=False,
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)
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ax = dyn.pl.kinetic_curves(adata, basis="umap", genes=adata.var_names[:4], save_show_or_return="return")
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assert isinstance(ax, sns.axisgrid.FacetGrid)
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ax = dyn.pl.kinetic_heatmap(adata, basis="umap", genes=adata.var_names[:4], save_show_or_return="return")
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assert isinstance(ax, sns.matrix.ClusterGrid)
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dyn.tl.order_cells(adata, basis="umap")
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progenitor = adata.obs_names[adata.obs.Cell_type.isin(["Proliferating Progenitor", "Pigment Progenitor"])]
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dyn.vf.jacobian(
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adata, basis="umap", regulators=["ptmaa", "rpl5b"], effectors=["ptmaa", "rpl5b"], cell_idx=progenitor
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)
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ax = dyn.pl.jacobian_kinetics(
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adata,
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basis="umap",
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genes=adata.var_names[:4],
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regulators=["ptmaa", "rpl5b"],
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effectors=["ptmaa", "rpl5b"],
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tkey="Pseudotime",
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save_show_or_return="return",
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)
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assert isinstance(ax, sns.matrix.ClusterGrid)
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dyn.vf.sensitivity(adata, basis="umap", regulators=["rpl5b"], effectors=["ptmaa"], cell_idx=progenitor)
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ax = dyn.pl.sensitivity_kinetics(
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adata,
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basis="umap",
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genes=adata.var_names[:4],
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regulators=["rpl5b"],
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effectors=["ptmaa"],
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tkey="Pseudotime",
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save_show_or_return="return",
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)
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assert isinstance(ax, sns.matrix.ClusterGrid)

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