first commit from google-gemini/gemini-cli@bcce1e7

Author: Starlitnightly

.github/ISSUE_TEMPLATE/bug_report.yml

@@ -1,5 +1,5 @@
 name: Bug Report
-description: Report a bug to help us improve Gemini CLI
+description: Report a bug to help us improve Pantheon CLI
 labels: ['kind/bug', 'status/need-triage']
 body:
   - type: markdown
@@ -8,7 +8,7 @@ body:
         > [!IMPORTANT]  
         > Thanks for taking the time to fill out this bug report!
         >
-        > Please search **[existing issues](https://github.com/google-gemini/gemini-cli/issues)** to see if an issue already exists for the bug you encountered.
+        > Please search **[existing issues](https://github.com/aristoteleo/pantheon-cli/issues)** to see if an issue already exists for the bug you encountered.
 
   - type: textarea
     id: problem
@@ -29,12 +29,12 @@ body:
     id: info
     attributes:
       label: Client information
-      description: Please paste the full text from the `/about` command run from Gemini CLI. Also include which platform (macOS, Windows, Linux).
+      description: Please paste the full text from the `/about` command run from Pantheon CLI. Also include which platform (macOS, Windows, Linux).
       value: |
         <details>
 
         ```console
-        $ gemini /about
+        $ pantheon /about
         # paste output here
         ```
 

.github/ISSUE_TEMPLATE/feature_request.yml

@@ -8,7 +8,7 @@ body:
         > [!IMPORTANT]  
         > Thanks for taking the time to suggest an enhancement!
         >
-        > Please search **[existing issues](https://github.com/google-gemini/gemini-cli/issues)** to see if a similar feature has already been requested.
+        > Please search **[existing issues](https://github.com/aristoteleo/pantheon-cli/issues)** to see if a similar feature has already been requested.
 
   - type: textarea
     id: feature

.gitmodules

@@ -0,0 +1,6 @@
+[submodule "pantheon-agents"]
+	path = pantheon-agents
+	url = https://github.com/aristoteleo/pantheon-agents
+[submodule "pantheon-single-cell"]
+	path = pantheon-single-cell
+	url = https://github.com/aristoteleo/pantheon-single-cell

CONTRIBUTING.md

@@ -98,8 +98,8 @@ This section guides contributors on how to build, modify, and understand the dev
 To clone the repository:
 
 ```bash
-git clone https://github.com/google-gemini/gemini-cli.git # Or your fork's URL
-cd gemini-cli
+git clone https://github.com/aristoteleo/pantheon-cli.git # Or your fork's URL
+cd pantheon-cli
 ```
 
 To install dependencies defined in `package.json` as well as root dependencies:
@@ -209,7 +209,7 @@ npm run lint
 ### Coding Conventions
 
 - Please adhere to the coding style, patterns, and conventions used throughout the existing codebase.
-- Consult [GEMINI.md](https://github.com/google-gemini/gemini-cli/blob/main/GEMINI.md) (typically found in the project root) for specific instructions related to AI-assisted development, including conventions for React, comments, and Git usage.
+- Consult [GEMINI.md](https://github.com/aristoteleo/pantheon-cli/blob/main/GEMINI.md) (typically found in the project root) for specific instructions related to AI-assisted development, including conventions for React, comments, and Git usage.
 - **Imports:** Pay special attention to import paths. The project uses ESLint to enforce restrictions on relative imports between packages.
 
 ### Project Structure

README.md

@@ -1,68 +1,33 @@
-# Gemini CLI
+# Pantheon CLI
 
-[![Gemini CLI CI](https://github.com/google-gemini/gemini-cli/actions/workflows/ci.yml/badge.svg)](https://github.com/google-gemini/gemini-cli/actions/workflows/ci.yml)
-
-![Gemini CLI Screenshot](./docs/assets/gemini-screenshot.png)
-
-This repository contains the Gemini CLI, a command-line AI workflow tool that connects to your
-tools, understands your code and accelerates your workflows.
-
-With the Gemini CLI you can:
-
-- Query and edit large codebases in and beyond Gemini's 1M token context window.
-- Generate new apps from PDFs or sketches, using Gemini's multimodal capabilities.
-- Automate operational tasks, like querying pull requests or handling complex rebases.
-- Use tools and MCP servers to connect new capabilities, including [media generation with Imagen,
-  Veo or Lyria](https://github.com/GoogleCloudPlatform/vertex-ai-creative-studio/tree/main/experiments/mcp-genmedia)
-- Ground your queries with the [Google Search](https://ai.google.dev/gemini-api/docs/grounding)
-  tool, built into Gemini.
+<img width="1256" height="300" alt="Image" src="https://private-user-images.githubusercontent.com/46667721/472695511-ab7a5b43-0531-4870-a8a2-93f6709fb67b.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.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.duSGtnaa7ONSzdNvRoqd-h6x5j4AFM1UQ9S7do5Vk-8" />
 
 ## Quickstart
 
-You have two options to install Gemini CLI.
+You have two options to install Pantheon CLI.
 
 ### With Node
 
 1. **Prerequisites:** Ensure you have [Node.js version 20](https://nodejs.org/en/download) or higher installed.
 2. **Run the CLI:** Execute the following command in your terminal:
 
    ```bash
-   npx https://github.com/google-gemini/gemini-cli
-   ```
-
-   Or install it with:
-
-   ```bash
-   npm install -g @google/gemini-cli
+   npm run build
    ```
 
    Then, run the CLI from anywhere:
 
    ```bash
-   gemini
+   npm run start
    ```
 
-### With Homebrew
-
-1. **Prerequisites:** Ensure you have [Homebrew](https://brew.sh/) installed.
-2. **Install the CLI** Execute the following command in your terminal:
-
-   ```bash
-   brew install gemini-cli
-   ```
-
-   Then, run the CLI from anywhere:
-
-   ```bash
-   gemini
-   ```
 
 ### Common Configuration steps
 
 3. **Pick a color theme**
 4. **Authenticate:** When prompted, sign in with your personal Google account. This will grant you up to 60 model requests per minute and 1,000 model requests per day using Gemini.
 
-You are now ready to use the Gemini CLI!
+You are now ready to use the Pantheon CLI!
 
 ### Use a Gemini API key:
 
@@ -93,119 +58,7 @@ The Vertex AI API provides a [free tier](https://cloud.google.com/vertex-ai/gene
 
 For other authentication methods, including Google Workspace accounts, see the [authentication](./docs/cli/authentication.md) guide.
 
-## Examples
-
-Once the CLI is running, you can start interacting with Gemini from your shell.
-
-You can start a project from a new directory:
-
-```sh
-cd new-project/
-gemini
-> Write me a Gemini Discord bot that answers questions using a FAQ.md file I will provide
-```
-
-Or work with an existing project:
-
-```sh
-git clone https://github.com/google-gemini/gemini-cli
-cd gemini-cli
-gemini
-> Give me a summary of all of the changes that went in yesterday
-```
-
-### Next steps
-
-- Learn how to [contribute to or build from the source](./CONTRIBUTING.md).
-- Explore the available **[CLI Commands](./docs/cli/commands.md)**.
-- If you encounter any issues, review the **[troubleshooting guide](./docs/troubleshooting.md)**.
-- For more comprehensive documentation, see the [full documentation](./docs/index.md).
-- Take a look at some [popular tasks](#popular-tasks) for more inspiration.
-- Check out our **[Official Roadmap](./ROADMAP.md)**
-
-### Troubleshooting
-
-Head over to the [troubleshooting guide](docs/troubleshooting.md) if you're
-having issues.
-
-## Popular tasks
-
-### Explore a new codebase
-
-Start by `cd`ing into an existing or newly-cloned repository and running `gemini`.
-
-```text
-> Describe the main pieces of this system's architecture.
-```
-
-```text
-> What security mechanisms are in place?
-```
-
-```text
-> Provide a step-by-step dev onboarding doc for developers new to the codebase.
-```
-
-```text
-> Summarize this codebase and highlight the most interesting patterns or techniques I could learn from.
-```
-
-```text
-> Identify potential areas for improvement or refactoring in this codebase, highlighting parts that appear fragile, complex, or hard to maintain.
-```
-
-```text
-> Which parts of this codebase might be challenging to scale or debug?
-```
-
-```text
-> Generate a README section for the [module name] module explaining what it does and how to use it.
-```
-
-```text
-> What kind of error handling and logging strategies does the project use?
-```
-
-```text
-> Which tools, libraries, and dependencies are used in this project?
-```
-
-### Work with your existing code
-
-```text
-> Implement a first draft for GitHub issue #123.
-```
-
-```text
-> Help me migrate this codebase to the latest version of Java. Start with a plan.
-```
-
-### Automate your workflows
-
-Use MCP servers to integrate your local system tools with your enterprise collaboration suite.
-
-```text
-> Make me a slide deck showing the git history from the last 7 days, grouped by feature and team member.
-```
-
-```text
-> Make a full-screen web app for a wall display to show our most interacted-with GitHub issues.
-```
-
-### Interact with your system
-
-```text
-> Convert all the images in this directory to png, and rename them to use dates from the exif data.
-```
-
-```text
-> Organize my PDF invoices by month of expenditure.
-```
-
-### Uninstall
-
-Head over to the [Uninstall](docs/Uninstall.md) guide for uninstallation instructions.
 
-## Terms of Service and Privacy Notice
+## Acknowledgments
 
-For details on the terms of service and privacy notice applicable to your use of Gemini CLI, see the [Terms of Service and Privacy Notice](./docs/tos-privacy.md).
+This project is based on [Google Gemini CLI](https://github.com/google-gemini/gemini-cli). We acknowledge and appreciate the excellent work of the Gemini CLI team. Our main contribution focuses on parser-level adaptations to better support Qwen-Coder models.

ROADMAP.md

@@ -1,13 +1,13 @@
-# Gemini CLI Roadmap
+# Pantheon CLI Roadmap
 
-The [Official Gemini CLI Roadmap](https://github.com/orgs/google-gemini/projects/11/)
+The [Official Pantheon CLI Roadmap](https://github.com/orgs/aristoteleo/projects/11/)
 
-Gemini CLI is an open-source AI agent that brings the power of Gemini directly into your terminal. It provides lightweight access to Gemini, giving you the most direct path from your prompt to our model.
+Pantheon CLI is an open-source AI agent that brings the power of Gemini directly into your terminal. It provides lightweight access to Gemini, giving you the most direct path from your prompt to our model.
 
-This document outlines our approach to the Gemini CLI roadmap. Here, you'll find our guiding principles and a breakdown of the key areas we are
+This document outlines our approach to the Pantheon CLI roadmap. Here, you'll find our guiding principles and a breakdown of the key areas we are
 focused on for development. Our roadmap is not a static list but a dynamic set of priorities that are tracked live in our GitHub Issues.
 
-As an [Apache 2.0 open source project](https://github.com/google-gemini/gemini-cli?tab=Apache-2.0-1-ov-file#readme), we appreciate and welcome [public contributions](https://github.com/google-gemini/gemini-cli/blob/main/CONTRIBUTING.md), and will give first priority to those contributions aligned with our roadmap. If you want to propose a new feature or change to our roadmap, please start by [opening an issue for discussion](https://github.com/google-gemini/gemini-cli/issues/new/choose).
+As an [Apache 2.0 open source project](https://github.com/aristoteleo/pantheon-cli?tab=Apache-2.0-1-ov-file#readme), we appreciate and welcome [public contributions](https://github.com/aristoteleo/pantheon-cli/blob/main/CONTRIBUTING.md), and will give first priority to those contributions aligned with our roadmap. If you want to propose a new feature or change to our roadmap, please start by [opening an issue for discussion](https://github.com/aristoteleo/pantheon-cli/issues/new/choose).
 
 ## Disclaimer
 
@@ -19,20 +19,20 @@ Our development is guided by the following principles:
 
 - **Power & Simplicity:** Deliver access to state-of-the-art Gemini models with an intuitive and easy-to-use lightweight command-line interface.
 - **Extensibility:** An adaptable agent to help you with a variety of use cases and environments along with the ability to run these agents anywhere.
-- **Intelligent:** Gemini CLI should be reliably ranked among the best agentic tools as measured by benchmarks like SWE Bench, Terminal Bench, and CSAT.
-- **Free and Open Source:** Foster a thriving open source community where cost isn’t a barrier to personal use, and PRs get merged quickly. This means resolving and closing issues, pull requests, and discussion posts quickly.
+- **Intelligent:** Pantheon CLI should be reliably ranked among the best agentic tools as measured by benchmarks like SWE Bench, Terminal Bench, and CSAT.
+- **Free and Open Source:** Foster a thriving open source community where cost isn't a barrier to personal use, and PRs get merged quickly. This means resolving and closing issues, pull requests, and discussion posts quickly.
 
 ## How the Roadmap Works
 
-Our roadmap is managed directly through Github Issues. See our entry point Roadmap Issue [here](https://github.com/google-gemini/gemini-cli/issues/4191). This approach allows for transparency and gives you a direct way to learn more or get involved with any specific initiative. All our roadmap items will be tagged as Type:`Feature` and Label:`maintainer` for features we are actively working on, or Type:`Task` and Label:`maintainer` for a more detailed list of tasks.
+Our roadmap is managed directly through Github Issues. See our entry point Roadmap Issue [here](https://github.com/aristoteleo/pantheon-cli/issues/4191). This approach allows for transparency and gives you a direct way to learn more or get involved with any specific initiative. All our roadmap items will be tagged as Type:`Feature` and Label:`maintainer` for features we are actively working on, or Type:`Task` and Label:`maintainer` for a more detailed list of tasks.
 
 Issues are organized to provide key information at a glance:
 
 - **Target Quarter:** `Milestone` denotes the anticipated delivery timeline.
 - **Feature Area:** Labels such as `area/model` or `area/tooling` categorizes the work.
 - **Issue Type:** _Workstream_ => _Epics_ => _Features_ => _Tasks|Bugs_
 
-To see what we're working on, you can filter our issues by these dimensions. See all our items [here](https://github.com/orgs/google-gemini/projects/11/views/19)
+To see what we're working on, you can filter our issues by these dimensions. See all our items [here](https://github.com/orgs/aristoteleo/projects/11/views/19)
 
 ## Focus Areas
 
@@ -44,7 +44,7 @@ find initiatives that interest you.
 - **User Experience:** Improve the CLI's usability, performance, interactive features, and documentation.
 - **Tooling:** Built-in tools and the MCP ecosystem.
 - **Core:** Core functionality of the CLI
-- **Extensibility:** Bringing Gemini CLI to other surfaces e.g. GitHub.
+- **Extensibility:** Bringing Pantheon CLI to other surfaces e.g. GitHub.
 - **Contribution:** Improve the contribution process via test automation and CI/CD pipeline enhancements.
 - **Platform:** Manage installation, OS support, and the underlying CLI framework.
 - **Quality:** Focus on testing, reliability, performance, and overall product quality.
@@ -53,11 +53,11 @@ find initiatives that interest you.
 
 ## How to Contribute
 
-Gemini CLI is an open-source project, and we welcome contributions from the community! Whether you're a developer, a designer, or just an enthusiastic user you can find our [Community Guidelines here](https://github.com/google-gemini/gemini-cli/blob/main/CONTRIBUTING.md) to learn how to get started. There are many ways to get involved:
+Pantheon CLI is an open-source project, and we welcome contributions from the community! Whether you're a developer, a designer, or just an enthusiastic user you can find our [Community Guidelines here](https://github.com/aristoteleo/pantheon-cli/blob/main/CONTRIBUTING.md) to learn how to get started. There are many ways to get involved:
 
-- **Roadmap:** Please review and find areas in our [roadmap](https://github.com/google-gemini/gemini-cli/issues/4191) that you would like to contribute to. Contributions based on this will be easiest to integrate with.
-- **Report Bugs:** If you find an issue, please create a bug(https://github.com/google-gemini/gemini-cli/issues/new?template=bug_report.yml) with as much detail as possible. If you believe it is a critical breaking issue preventing direct CLI usage, please tag it as `priorty/p0`.
-- **Suggest Features:** Have a great idea? We'd love to hear it! Open a [feature request](https://github.com/google-gemini/gemini-cli/issues/new?template=feature_request.yml).
-- **Contribute Code:** Check out our [CONTRIBUTING.md](https://github.com/google-gemini/gemini-cli/blob/main/CONTRIBUTING.md) file for guidelines on how to submit pull requests. We have a list of "good first issues" for new contributors.
+- **Roadmap:** Please review and find areas in our [roadmap](https://github.com/aristoteleo/pantheon-cli/issues/4191) that you would like to contribute to. Contributions based on this will be easiest to integrate with.
+- **Report Bugs:** If you find an issue, please create a bug(https://github.com/aristoteleo/pantheon-cli/issues/new?template=bug_report.yml) with as much detail as possible. If you believe it is a critical breaking issue preventing direct CLI usage, please tag it as `priorty/p0`.
+- **Suggest Features:** Have a great idea? We'd love to hear it! Open a [feature request](https://github.com/aristoteleo/pantheon-cli/issues/new?template=feature_request.yml).
+- **Contribute Code:** Check out our [CONTRIBUTING.md](https://github.com/aristoteleo/pantheon-cli/blob/main/CONTRIBUTING.md) file for guidelines on how to submit pull requests. We have a list of "good first issues" for new contributors.
 - **Write Documentation:** Help us improve our documentation, tutorials, and examples.
-  We are excited about the future of Gemini CLI and look forward to building it with you!
+  We are excited about the future of Pantheon CLI and look forward to building it with you!

docs/cli/configuration.md

@@ -44,7 +44,7 @@ In addition to a project settings file, a project's `.gemini` directory can cont
 
 - **`bugCommand`** (object):
   - **Description:** Overrides the default URL for the `/bug` command.
-  - **Default:** `"urlTemplate": "https://github.com/google-gemini/gemini-cli/issues/new?template=bug_report.yml&title={title}&info={info}"`
+  - **Default:** `"urlTemplate": "https://github.com/aristoteleo/pantheon-cli/issues/new?template=bug_report.yml&title={title}&info={info}"`
   - **Properties:**
     - **`urlTemplate`** (string): A URL that can contain `{title}` and `{info}` placeholders.
   - **Example:**
@@ -497,10 +497,4 @@ To help us improve the Gemini CLI, we collect anonymized usage statistics. This
 
 **How to opt out:**
 
-You can opt out of usage statistics collection at any time by setting the `usageStatisticsEnabled` property to `false` in your `settings.json` file:
-
-```json
-{
-  "usageStatisticsEnabled": false
-}
-```
+You can opt out of usage statistics collection at any time by setting the `usageStatisticsEnabled` property to `false`

docs/deployment.md

@@ -80,7 +80,7 @@ You can run the most recently committed version of Gemini CLI directly from the
 
 ```bash
 # Execute the CLI directly from the main branch on GitHub
-npx https://github.com/google-gemini/gemini-cli
+npx https://github.com/aristoteleo/pantheon-cli
 ```
 
 ## Deployment architecture