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Interleaved fastq file #11

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lskatz opened this issue Jun 30, 2021 · 1 comment
Open

Interleaved fastq file #11

lskatz opened this issue Jun 30, 2021 · 1 comment

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@lskatz
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lskatz commented Jun 30, 2021

I think related to #3 (?), how would you parse an interleaved fastq file? Where read 1 is the first entry of the file and read 2 is the second entry, etc. Thank you!

@lskatz
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lskatz commented Jun 30, 2021

Here is how I hacked it but I would love to use the parallel.each function instead. https://github.com/lskatz/fasten/blob/fast-fastq-parser/src/bin/fasten_combine.rs#L51 and on the same script, https://github.com/lskatz/fasten/blob/fast-fastq-parser/src/bin/fasten_combine.rs#L83 (I am also seeing a bug where I need to put that code on line 83 down to the bottom of the loop)

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