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docs(ephys): update coordinate system names and fix Stereotaxic spelling
- Change StereoTaxic to Stereotaxic for correct scientific terminology
- Replace PaxinosWatson with WaxholmSpace and WistarRatAtlas coordinate systems
- Remove outdated TODO comment about adding coordinate systems to appendix
- Update file naming examples to use corrected Stereotaxic spelling
Copy file name to clipboardExpand all lines: src/modality-specific-files/microelectrode-electrophysiology.md
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@@ -520,11 +520,11 @@ standard space as specified in the BIDS [Coordinate Systems Appendix](../appendi
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For example:
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-`*_space-StereoTaxic` (electrodes are localized in stereotactic coordinate system with bregma origin)
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<!-- TODO: Add 'StereoTaxic', 'AllenCCFv3', 'PaxinosWatson', etc coordinate systems to appendix coordinate-systems.md under "Microelectrode Electrophysiology Specific Coordinate Systems" with appropriate definitions for each standard reference frame used in animal electrophysiology -->
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-`*_space-Stereotaxic` (electrodes are localized in stereotaxic coordinate system with bregma origin)
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-`*_space-individual` (electrodes are localized in subject-specific anatomical coordinate system)
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-`*_space-AllenCCFv3` (electrodes are mapped to Allen Common Coordinate Framework v3)
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-`*_space-PaxinosWatson` (electrodes are mapped to Paxinos-Watson rat brain atlas coordinates)
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-`*_space-WaxholmSpace` (electrodes are mapped to Waxholm Space rat brain atlas coordinates)
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-`*_space-WistarRatAtlas` (electrodes are mapped to Wistar Rat Atlas coordinates)
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When referring to the `*_electrodes.tsv` file in a certain *space* as defined
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above, the [`space-<label>`](../appendices/entities.md#space) of the accompanying `*_coordsystem.json` MUST
@@ -543,7 +543,7 @@ with (0,0) corresponding to the upper left pixel and (N,0) corresponding to the
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### Multiple coordinate systems
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If electrode positions are known in multiple coordinate systems (for example, probe-relative, StereoTaxic,
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If electrode positions are known in multiple coordinate systems (for example, probe-relative, Stereotaxic,
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and AllenCCFv3), these spaces can be distinguished by the [`space-<label>`](../appendices/entities.md#space)
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entity.
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Note that the [`space-<label>`](../appendices/entities.md#space) fields must correspond
@@ -560,8 +560,8 @@ A guide for using macros can be found at
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