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docs(ephys): update coordinate system names and fix Stereotaxic spelling
- Change StereoTaxic to Stereotaxic for correct scientific terminology - Replace PaxinosWatson with WaxholmSpace and WistarRatAtlas coordinate systems - Remove outdated TODO comment about adding coordinate systems to appendix - Update file naming examples to use corrected Stereotaxic spelling
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src/modality-specific-files/microelectrode-electrophysiology.md

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@@ -520,11 +520,11 @@ standard space as specified in the BIDS [Coordinate Systems Appendix](../appendi
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For example:
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- `*_space-StereoTaxic` (electrodes are localized in stereotactic coordinate system with bregma origin)
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<!-- TODO: Add 'StereoTaxic', 'AllenCCFv3', 'PaxinosWatson', etc coordinate systems to appendix coordinate-systems.md under "Microelectrode Electrophysiology Specific Coordinate Systems" with appropriate definitions for each standard reference frame used in animal electrophysiology -->
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- `*_space-Stereotaxic` (electrodes are localized in stereotaxic coordinate system with bregma origin)
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- `*_space-individual` (electrodes are localized in subject-specific anatomical coordinate system)
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- `*_space-AllenCCFv3` (electrodes are mapped to Allen Common Coordinate Framework v3)
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- `*_space-PaxinosWatson` (electrodes are mapped to Paxinos-Watson rat brain atlas coordinates)
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- `*_space-WaxholmSpace` (electrodes are mapped to Waxholm Space rat brain atlas coordinates)
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- `*_space-WistarRatAtlas` (electrodes are mapped to Wistar Rat Atlas coordinates)
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When referring to the `*_electrodes.tsv` file in a certain *space* as defined
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above, the [`space-<label>`](../appendices/entities.md#space) of the accompanying `*_coordsystem.json` MUST
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### Multiple coordinate systems
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If electrode positions are known in multiple coordinate systems (for example, probe-relative, StereoTaxic,
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If electrode positions are known in multiple coordinate systems (for example, probe-relative, Stereotaxic,
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and AllenCCFv3), these spaces can be distinguished by the [`space-<label>`](../appendices/entities.md#space)
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entity.
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Note that the [`space-<label>`](../appendices/entities.md#space) fields must correspond
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{
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"sub-01": {
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"sub-01_electrodes.tsv": "",
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"sub-01_space-StereoTaxic_electrodes.tsv": "",
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"sub-01_space-StereoTaxic_coordsystem.json": "",
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"sub-01_space-Stereotaxic_electrodes.tsv": "",
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"sub-01_space-Stereotaxic_coordsystem.json": "",
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"...": "",
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},
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}

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