2.2.9

Changed

• Reverted terminal URLs for the 2.2.x series. It should be back in 2.3.0.

Full Changelog: 2.2.8...2.2.9

2.2.8

Changed

• Render Markdown links as OSC-8 links in terminals where support is detected.

Fixed

• Fix typo in S3 URL generation code that prevented reading remote files.

Full Changelog: 2.2.7...2.2.8

2.2.7

Added

• Maintainer documentation for creating and fixing releases.

• Support for rendering Markdown in validation messages in the terminal.

• Display validation summaries for derivative datasets when recursive validation (-r/--recursive) is run.

• Support for presigning S3 URLs if AWS credentials are detected.

Fixed

• Validate derivative file paths relative to the derivative dataset root.

• Have all three calls to fetch in HttpOpener use same error handling.

• Fix memoization memory leak for readRemotes.

• Replace SPEC_ROOT placeholder with actual documentation link in CLI output.

Infrastructure

• Pin Deno to 2.5.6 in wheel builds to account for bugs with MacOS binaries compiled with 2.6.0.

Full Changelog: 2.2.6...2.2.7

2.2.6

This release addresses issues with our publication process.

Pull requests merged

• chore: Publish whatever wheels successfully build by @effigies in #313

Full Changelog: 2.2.5...2.2.6

2.2.5

Added

• Support for template and cohort directories, as introduced in BEP038.

Fixed

• The AMBIGUOUS_AFFINE issue was given an error message and set to warning.
• Very oblique affines are no longer considered ambiguous.
• Resolved TypeError when rendering issues for JSON outputs.

Pull requests merged

• fix: Filter issue fields when storing by @effigies in #311
• fix: Define AMBIGUOUS_AFFINE, make a warning, raise less often by @effigies in #310
• BEP038 patches by @effigies in #288

Full Changelog: 2.2.4...2.2.5

2.2.4

Added

• Annexed files with base-64-encoded version information are now supported.

Pull requests merged

• feat: Support base64-encoded S3 metadata by @effigies in #302

Full Changelog: 2.2.3...2.2.4

2.2.3

Fixed

• NIfTI files with bad qform matrices, resulting from non-normalized quaternions, would previously raise a NIFTI_HEADER_UNREADABLE error. Now only the axis codes are disabled, preventing orientation checks, but not raising errors.

Pull requests merged

• fix: Set nifti_header.axis_codes to null for bad qforms, rather than error by @effigies in #297

Full Changelog: 2.2.2...2.2.3

2.2.2

Changed

• Support min() and max() of numbers in the expression language. This allows for simpler rules when a field may be a number or array of numbers.

• Annexed files that are not local are treated as empty instead of erroring if a remote URL could not be constructed. The size of missing files are included in the summary estimate of dataset size.

Fixed

• INVALID_FILE_ENCODING issues now print sensible messages instead of crashing.

Pull requests merged

• feat: Support min/max of single numbers by @effigies in #284
• chore: Bump schema by @effigies in #285
• feat: Fall back to an empty file for absent symlinks with no public S3 URL by @effigies in #287
• chore(ci): Build against macos-15-intel by @effigies in #289
• fix: Add missing INVALID_FILE_ENCODING issue definition by @nellh in #292

Full Changelog: 2.2.1...2.2.2

2.2.1

Added

• Support for associations.physio and associations.events.sidecar.

• Implement associations.coordsystems to collate multiple coordsystem.json files,
  as required by BEP 042 (EMG).

Changed

• Validation context generation was tweaked to improve concurrency, giving 4x validation
  speedups in some cases.

Pull requests merged

• test: Add opener implementations for tests by @effigies in #283
• feat: Start loading contexts earlier, buffer contexts for better concurrency by @effigies in #282
• BEP020 patches by @effigies in #260
• BEP042 patches by @drammock in #268

Full Changelog: 2.2.0...2.2.1

2.2.0

Added

• Added --format option to specify output format: text (default), json, or json_pp (pretty-printed JSON)

• Pretty-printed JSON output support via --format json_pp option

• Datalad/git-annex datasets with remote content in public S3 buckets can be validated with the --preferredRemote <remote-name> flag. If a public S3 bucket is detected without this flag, the most recent export is used.

Changed

• Refactored file access classes to be more DRY.

Fixed

• Circular references that could lead to a hanging process were mitigated. (#278)

Deprecated

• Deprecated --json option in favor of --format json (backward compatibility maintained)

What's Changed

• fix: Weakly reference parent FileTrees, upgrade hed-validator by @effigies in #279
• feat: add --format option for output formatting by @djken2009 in #271
• rf: Make BIDSFile generic wrapper, with FileOpener providing the file type handling by @effigies in #280
• feat: Load annexed data from public S3 special remotes by @effigies in #281

Full Changelog: 2.1.1...2.2.0