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Replace bids.neuroimaging.io with bids-standard.org #674

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[DATALAD RUNCMD] Replace bids.neuroimaging.io with bids-standard.org
yarikoptic Jun 12, 2025
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4 changes: 2 additions & 2 deletions .github/ISSUE_TEMPLATE/bids_apps_submission.yml
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- type: markdown
attributes:
value: |
- Have you checked our [contributing guide](https://bids.neuroimaging.io/collaboration/bids_github/CONTRIBUTING.html)?
- Have you checked our [contributing guide](https://bids-standard.org/collaboration/bids_github/CONTRIBUTING.html)?
It's a helpful resource.

- Have you checked our [FAQ](https://bids.neuroimaging.io/faq/bids-apps.html)?
- Have you checked our [FAQ](https://bids-standard.org/faq/bids-apps.html)?

- type: textarea
attributes:
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2 changes: 1 addition & 1 deletion .github/ISSUE_TEMPLATE/feature_request.yml
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If not, please open an issue in the [bids-2-devel repository](https://github.com/bids-standard/bids-2-devel) instead.

- Is there already a group working on your idea?
Check the [BIDS extension proposals](https://bids.neuroimaging.io/get_involved.html#extending-the-bids-specification)
Check the [BIDS extension proposals](https://bids-standard.org/get_involved.html#extending-the-bids-specification)

- Will your idea potentially require a large effort?
Read [BEP lead guidelines](https://docs.google.com/document/d/1pWmEEY-1-WuwBPNy5tDAxVJYQ9Een4hZJM06tQZg8X4/).
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2 changes: 1 addition & 1 deletion CONTRIBUTING.md
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Expand Up @@ -9,7 +9,7 @@ If you have any questions that aren't discussed below, please let us know
by [opening an issue](https://github.com/bids-standard/bids-website/issues/new).

If you are not familiar with Git and GitHub,
check our [generic contributing guidelines](https://bids.neuroimaging.io/collaboration/bids_github/CONTRIBUTING.html).
check our [generic contributing guidelines](https://bids-standard.org/collaboration/bids_github/CONTRIBUTING.html).

If you want to contribute to the BIDS website,
make sure you also read the instructions below.
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6 changes: 3 additions & 3 deletions README.md
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# BIDS website

View it here: https://bids.neuroimaging.io
View it here: https://bids-standard.org

## Contributing to the BIDS website

Expand All @@ -38,5 +38,5 @@ on the [bids-specification][specification_gh] repository.
If you have questions how to apply BIDS to your dataset,
how to use a shared BIDS dataset,
or about tools to convert and/or handle BIDS datasets,
please see the [getting started section](https://bids.neuroimaging.io/getting_started/index.html) page,
and our [FAQ](https://bids.neuroimaging.io/faq/index.html).
please see the [getting started section](https://bids-standard.org/getting_started/index.html) page,
and our [FAQ](https://bids-standard.org/faq/index.html).
2 changes: 1 addition & 1 deletion data/beps/beps.yml
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family-names: Halchenko
bids_maintainers:
status:
- '[Specification](https://bids.neuroimaging.io/bep028)'
- '[Specification](https://bids-standard.org/bep028)'
- '[Set of examples](https://github.com/bids-standard/BEP028_BIDSprov)'
- 'Perspectives: Opening up to BIDS community for feedback'
- 'Perspectives: Engaging with software developers (in progress w/ SPM, AFNI)'
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2 changes: 1 addition & 1 deletion data/people/advisory.yml
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members:

# NOTE: ONLY COMPLETED BEPs ARE INCLUDED IN THIS LIST
# SEE: https://bids.neuroimaging.io/get_involved.html#completed-beps
# SEE: https://bids-standard.org/get_involved.html#completed-beps
#
# FURTHERMORE, THE LEADS LISTED HERE NEED NOT HAVE BEEN THE ORIGINAL BEP LEADS.
# RATHER, THEY MAY BE REPLACEMENTS OF THE ORIGINAL BEP LEADS WHO DID NO LONGER
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3 changes: 0 additions & 3 deletions data/people/steering.yml
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git: CPernet
- name: Franco Pestilli
git: francopestilli



3 changes: 1 addition & 2 deletions data/tools/converters.yml
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- code files in MATLAB/Python/R
language:
- Python
comment: GUI to easily convert simulation results to BIDS format, according to <a href="https://bids.neuroimaging.io/bep034" target="_blank"> BEP 34
</a>.
comment: GUI to easily convert simulation results to BIDS format, according to <a href="https://bids-standard.org/bep034" target="_blank"> BEP 34 </a>.
license: MIT

- name: sovabids
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2 changes: 1 addition & 1 deletion data/tools/tools.yml
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- MATLAB
- Octave
category: file handling
description: a tool convert SPM preprocessed output to BIDS derivatives (trying to follow [BEP12](https://bids.neuroimaging.io/bep012))
description: a tool convert SPM preprocessed output to BIDS derivatives (trying to follow [BEP12](https://bids-standard.org/bep012))
2 changes: 1 addition & 1 deletion docs/CNAME
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@@ -1 +1 @@
bids.neuroimaging.io
bids-standard.org
2 changes: 1 addition & 1 deletion docs/blog/posts/2020-03-12-steering-group-minutes.md
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Expand Up @@ -27,7 +27,7 @@ The plan is that there should be multiple people committed to the repository (ot
[CODEOWNERS file](https://docs.github.com/en/repositories/managing-your-repositorys-settings-and-features/customizing-your-repository/about-code-owners#about-code-owners)
at the top level), there should be a code of conduct in the repository that is consistent with that of the BIDS specification, and (as a consequence of the code of conduct) the repository should welcome contributions from others.

We want to host another [Community Forum](https://bids.neuroimaging.io/blog/2020/01/02/Announcing%20Community%20Forum%20Events.html) (but not too frequent) and potentially a starter kit/demo in the Open Science Room at [OHBM](https://www.humanbrainmapping.org).
We want to host another [Community Forum](https://bids-standard.org/blog/2020/01/02/Announcing%20Community%20Forum%20Events.html) (but not too frequent) and potentially a starter kit/demo in the Open Science Room at [OHBM](https://www.humanbrainmapping.org).

Regarding discussions on where to host our historical specification pdfs (please refer to issue [#407](https://github.com/bids-standard/bids-specification/pull/407)), we consider [Zenodo](https://zenodo.org/) to be a suitable location to store our specification pdfs.

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4 changes: 2 additions & 2 deletions docs/blog/posts/2020-03-23-steering-group-minutes.md
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Expand Up @@ -49,9 +49,9 @@ The Steering Group gave direction on handling author lists on Zenodo - make it a

## Minutes

- Reviewed [previous meeting action items](https://bids.neuroimaging.io/blog/2020/03/12/Steering%20Group%20minutes.html#action-items)
- Reviewed [previous meeting action items](https://bids-standard.org/blog/2020/03/12/Steering%20Group%20minutes.html#action-items)

- A [survey](https://docs.google.com/forms/d/e/1FAIpQLSfGjTA-U_1LECRsbuBQ9X7kdi34aEdxTMoWCwwkEgou-qpb4A/viewform) with an accompanying [blog post](https://bids.neuroimaging.io/blog/2020/03/20/Engage%20with%20the%20BIDS%20ecosystem.html) was drafted to evaluate how the community would like to engage with each other, what barriers may exist that makes engaging more challenging, and ways that we can engage colleagues that do not know about BIDS.
- A [survey](https://docs.google.com/forms/d/e/1FAIpQLSfGjTA-U_1LECRsbuBQ9X7kdi34aEdxTMoWCwwkEgou-qpb4A/viewform) with an accompanying [blog post](https://bids-standard.org/blog/2020/03/20/Engage%20with%20the%20BIDS%20ecosystem.html) was drafted to evaluate how the community would like to engage with each other, what barriers may exist that makes engaging more challenging, and ways that we can engage colleagues that do not know about BIDS.

- Points to consider when designing the infrastructure to support BIDS slides

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2 changes: 1 addition & 1 deletion docs/blog/posts/2020-03-30-steering-group-minutes.md
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Expand Up @@ -20,7 +20,7 @@ This should be less than 1 page and keep a high level view of BIDS. The executiv
The update may also link to issues with a 1 sentence narrative.
Keeping in mind the purpose of the update from the Steering Group’s perspective: knowing the hard parts or blockers and capture the work needed to maintain BIDS.

We invited the [ASL BEP](https://bids.neuroimaging.io/bep005) leads to the next Steering Group meeting.
We invited the [ASL BEP](https://bids-standard.org/bep005) leads to the next Steering Group meeting.

## Action Items

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## Executive Summary

We were joined in this meeting by the BIDS-ASL BEP leads.
We spent the majority of this meeting discussing the [BIDS-ASL](https://bids.neuroimaging.io/bep005) BEP development approach and status along with any open questions they may have.
We see a natural integration between the [ASL](https://bids.neuroimaging.io/bep005) and [PET](https://bids.neuroimaging.io/bep009) BEP projects.
We spent the majority of this meeting discussing the [BIDS-ASL](https://bids-standard.org/bep005) BEP development approach and status along with any open questions they may have.
We see a natural integration between the [ASL](https://bids-standard.org/bep005) and [PET](https://bids-standard.org/bep009) BEP projects.
While talking to the ASL team we found that our definition of `raw` needs to be refined and made more specific.
We want to ensure that fields previously specified remain consistent, when possible. Once the raw ASL specification is merged the group will move forward with derivatives.

Expand All @@ -26,7 +26,7 @@ We want to ensure that fields previously specified remain consistent, when possi

## Minutes

This meeting was primarily focused on meeting with the [BIDS-ASL](https://bids.neuroimaging.io/bep005) BEP leads to discuss their BEP and getting it over the finish line
This meeting was primarily focused on meeting with the [BIDS-ASL](https://bids-standard.org/bep005) BEP leads to discuss their BEP and getting it over the finish line

- The ASL specification was initially pushed by physicists in the [ISMRM](https://www.ismrm.org/) community
- A few challenges toward specifying was evaluating differing sequence and scaling
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8 changes: 4 additions & 4 deletions docs/blog/posts/2020-05-07-steering-group-minutes.md
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Expand Up @@ -25,7 +25,7 @@ The author section may include the potential for a paragraph (max) narrative of
This will be enhancing our current emoji representation of contributions.
This will give the community more opportunity to capture their specific contributions to BIDS.

We accepted three new BEPs: [Provenance](https://bids.neuroimaging.io/bep028), [Virtual and physical motion data](https://bids.neuroimaging.io/bep029), and [Near-Infrared Spectroscopy](https://bids.neuroimaging.io/bep030).
We accepted three new BEPs: [Provenance](https://bids-standard.org/bep028), [Virtual and physical motion data](https://bids-standard.org/bep029), and [Near-Infrared Spectroscopy](https://bids-standard.org/bep030).
These have been added to the website. We primarily evaluated the scope and if this is a duplicated effort.
It is important for BEPs to signal community engagement and buy-in for their extension proposal from the respective modality community.

Expand Down Expand Up @@ -67,9 +67,9 @@ This was a joint meeting between the Steering Group and Maintainers Group to go

- Accepted BEPs

- [BEP028: Provenance](https://bids.neuroimaging.io/bep028)
- [BEP029: Virtual and physical motion data](https://bids.neuroimaging.io/bep029)
- [BEP030: Near-Infrared Spectroscopy](https://bids.neuroimaging.io/bep030)
- [BEP028: Provenance](https://bids-standard.org/bep028)
- [BEP029: Virtual and physical motion data](https://bids-standard.org/bep029)
- [BEP030: Near-Infrared Spectroscopy](https://bids-standard.org/bep030)

- Steering Group review consists primarily of ensuring it is within scope and not duplicating efforts

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We discussed and decided on utilizing the [BrainHack Mattermost platform][brainhack_mattermost] for our instant messaging solution. This fits nicely into where our community has been informally organized.

We went over our BIDS presentations occurring in the [Open Science Room](https://ohbm.github.io/osr2020/schedule/) at [OHBM](https://www.humanbrainmapping.org/i4a/pages/index.cfm?pageID=3885). We are sharing on the website [all the BIDS presentations and posters](https://bids.neuroimaging.io/blog/2020/06/19/BIDS%20at%20OHBM%202020.html) happening at OHBM. There are many BIDS-aware tools being developed, but an emphasis should be put on generating the associated documentation.
We went over our BIDS presentations occurring in the [Open Science Room](https://ohbm.github.io/osr2020/schedule/) at [OHBM](https://www.humanbrainmapping.org/i4a/pages/index.cfm?pageID=3885). We are sharing on the website [all the BIDS presentations and posters](https://bids-standard.org/blog/2020/06/19/BIDS%20at%20OHBM%202020.html) happening at OHBM. There are many BIDS-aware tools being developed, but an emphasis should be put on generating the associated documentation.

## Action Items

| Action items |
| ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
| [Website post announcing our intention of joining the BrainHack Mattermost](https://bids.neuroimaging.io/blog/2020/06/24/Join%20the%20BIDS%20community%20on%20the%20BrainHack%20Mattermost.html) |
| [Website post listing the BIDS sessions and posters at OHBM](https://bids.neuroimaging.io/blog/2020/06/19/BIDS%20at%20OHBM%202020.html) |
| [Website post announcing our intention of joining the BrainHack Mattermost](https://bids-standard.org/blog/2020/06/24/Join%20the%20BIDS%20community%20on%20the%20BrainHack%20Mattermost.html) |
| [Website post listing the BIDS sessions and posters at OHBM](https://bids-standard.org/blog/2020/06/19/BIDS%20at%20OHBM%202020.html) |

## Minutes

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We held a joint meeting between the Steering Group and Maintainers Group.
We finished our discussion on how we can support and collaborate with external organizations.
We approved [BEP031: Histology](https://bids.neuroimaging.io/bep031).
We approved [BEP031: Histology](https://bids-standard.org/bep031).
This BEP will be different from our currently supported modalities.
We will need to think through how this will be ultimately validated.
It will also be beneficial to think about natural merge points with other BEPs.
Expand All @@ -25,14 +25,14 @@ This can be used to inform how we can effectively work with other initiatives.

| Action items |
| ---------------------------------------------------------------- |
| Add [BEP031](https://bids.neuroimaging.io/bep031) to the website |
| Add [BEP031](https://bids-standard.org/bep031) to the website |

## Minutes

Joint meeting between the Steering Group and Maintainers Group

- Discussed approaches to collaborating with other organizations (for example EBrains)
- Approved Histology as [BEP031](https://bids.neuroimaging.io/bep031)
- Approved Histology as [BEP031](https://bids-standard.org/bep031)
- Think through how the validation may look because this modality is different than our currently supported ones
- Be clear what success looks like with the BEP team
- Think about merge points with other modalities
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The Steering Group met to discuss the latest BEP updates.
[ASL](https://github.com/bids-standard/bids-specification/pull/669) and [qMRI](https://github.com/bids-standard/bids-specification/pull/690) are close to being released with PET following soon after.
We spent the majority of the meeting with the leads from [BEP20: Eye Tracking](https://bids.neuroimaging.io/bep020).
We spent the majority of the meeting with the leads from [BEP20: Eye Tracking](https://bids-standard.org/bep020).
They are progressing nicely and starting to finalize their specification.
They are having their Eye Tracking community review prior to escalating up to the BIDS community.
They are reaching a consensus within their community.
Expand All @@ -28,7 +28,7 @@ N/A
- [qMRI specification](https://github.com/bids-standard/bids-specification/pull/690) is merged. Working on examples and validator
- After ASL and qMRI are release, we will focus on getting PET incorporated

The Steering Group was joined by [BEP20: Eye Tracking](https://bids.neuroimaging.io/bep020) leads
The Steering Group was joined by [BEP20: Eye Tracking](https://bids-standard.org/bep020) leads

- The community is reviewing the BEP

Expand Down Expand Up @@ -82,7 +82,7 @@ The Steering Group was joined by [BEP20: Eye Tracking](https://bids.neuroimaging

- One potential issue is [time series representation conflicts](https://github.com/bids-standard/bids-specification/issues/713)

- Coordinating with [BEP29: Virtual and physical motion](https://bids.neuroimaging.io/bep029)
- Coordinating with [BEP29: Virtual and physical motion](https://bids-standard.org/bep029)

- Meeting with relevant stakeholders

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</td>
<td>
Extension proposal:
<a href="https://bids.neuroimaging.io/bep030">
<a href="https://bids-standard.org/bep030">
<span class="underline">
https://bids.neuroimaging.io/bep030
https://bids-standard.org/bep030
</span>
</a>
</td>
Expand Down Expand Up @@ -82,9 +82,9 @@ categories:
</td>
<td>
Extension proposal:
<a href="https://bids.neuroimaging.io/bep033">
<a href="https://bids-standard.org/bep033">
<span class="underline">
https://bids.neuroimaging.io/bep033
https://bids-standard.org/bep033
</span>
</a>
</td>
Expand Down Expand Up @@ -235,17 +235,17 @@ categories:
<td>
<p>
aDWI - BEP33:
<a href="https://bids.neuroimaging.io/bep033">
<a href="https://bids-standard.org/bep033">
<span class="underline">
https://bids.neuroimaging.io/bep033
https://bids-standard.org/bep033
</span>
</a>
</p>
<p>
MIDS:
<a href="https://bids.neuroimaging.io/bep025">
<a href="https://bids-standard.org/bep025">
<span class="underline">
https://bids.neuroimaging.io/bep025
https://bids-standard.org/bep025
</span>
</a>
</p>
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Expand Up @@ -66,9 +66,9 @@ categories:
</p>
</td>
<td>
<a href="https://bids.neuroimaging.io/governance.html#c-Governance-ratification-and-BIDS-Steering-Group-initialization">
<a href="https://bids-standard.org/governance.html#c-Governance-ratification-and-BIDS-Steering-Group-initialization">
<span class="underline">
https://bids.neuroimaging.io/governance.html#c-Governance-ratification-and-BIDS-Steering-Group-initialization
https://bids-standard.org/governance.html#c-Governance-ratification-and-BIDS-Steering-Group-initialization
</span>
</a>
</td>
Expand Down Expand Up @@ -246,27 +246,27 @@ categories:
<td>
<p>
aDWI - BEP33:
<a href="https://bids.neuroimaging.io/bep033">
<a href="https://bids-standard.org/bep033">
<span class="underline">
https://bids.neuroimaging.io/bep033
https://bids-standard.org/bep033
</span>
</a>
</p>
<p>
MIDS - BEP25:
<a href="https://bids.neuroimaging.io/bep025">
<a href="https://bids-standard.org/bep025">
<span class="underline">
https://bids.neuroimaging.io/bep025
https://bids-standard.org/bep025
</span>
</a>
</p>
<p>
Microscopy - BEP31:
</p>
<p>
<a href="https://bids.neuroimaging.io/bep031">
<a href="https://bids-standard.org/bep031">
<span class="underline">
https://bids.neuroimaging.io/bep031
https://bids-standard.org/bep031
</span>
</a>
</p>
Expand All @@ -280,9 +280,9 @@ categories:
</p>
<p>
NIRS - BEP30:
<a href="https://bids.neuroimaging.io/bep030">
<a href="https://bids-standard.org/bep030">
<span class="underline">
https://bids.neuroimaging.io/bep030
https://bids-standard.org/bep030
</span>
</a>
</p>
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