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While running some tests with the SEPP placements in Qiita we noticed that the current code rewrites the placements as:
plcmnts['placements'].extend([{'p': placement, 'nm': [[sequence, 1]]}
for sequence, placement in placements.items()])
which is currently not supported by bp
so we had to rewrite them as:
plcmnts['placements'].extend([{'p': placement, 'n': [sequence, ]}
for sequence, placement in placements.items()])
Thus, wondering if this is enough or if there is any reason why bp
should support both.
cc: @sjanssen2; BTW the current version can add all the Qiita 150bp deblur fragments into the GG/SEPP backbone in < 3.5hrs and ~200Gb.
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