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biocorecrg · Oct 8, 2024 · 026a99c · 026a99c
1 parent 2344fa2
commit 026a99c
Showing 1 changed file with 20 additions and 13 deletions.
diff --git a/launch_nf.sh b/launch_nf.sh
@@ -1,16 +1,23 @@
-#!/bin/bash
+#!/usr/bin/env bash
 #SBATCH --no-requeue
-#SBATCH --mem 8192M
+#SBATCH --mem 6G
 #SBATCH -p genoa64
-#SBATCH --qos='pipelines'
-set -x
-pid=""
-	kill_func() {
-	echo TRAP; 
-	kill $pid ; 
-	wait $pid
+#SBATCH --qos pipelines
+
+set -e
+set -u
+
+_term() {
+        echo "Caught SIGTERM signal!"
+        kill -s SIGTERM $pid
+        wait $pid
 }
-trap kill_func INT
-trap kill_func EXIT
-
-"$@" & pid=$! ; echo "waiting for ${pid}" ; wait $pid 
+
+trap _term TERM
+
+"$@" & pid=$!
+
+echo "Waiting for ${pid}"
+wait $pid
+
+exit 0