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FROM biocorecrg/debian-perlbrew-pyenv3-java:buster AS builder
ARG IPSCAN_VERSION=5.72-103.0
# Install InterPro
RUN cd /usr/local; curl --retry 3 --fail --silent --show-error --location --remote-name https://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/${IPSCAN_VERSION}/alt/interproscan-core-${IPSCAN_VERSION}.tar.gz && \
curl --retry 3 --fail --silent --show-error --location --remote-name https://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/${IPSCAN_VERSION}/alt/interproscan-core-${IPSCAN_VERSION}.tar.gz.md5 && \
md5sum -c interproscan-core-${IPSCAN_VERSION}.tar.gz.md5
RUN cd /usr/local; tar zxf interproscan-core-${IPSCAN_VERSION}.tar.gz --exclude "interproscan-${IPSCAN_VERSION}/data" && rm interproscan-core-${IPSCAN_VERSION}.tar.gz interproscan-core-${IPSCAN_VERSION}.tar.gz.md5
# Replace interproscan.properties
COPY interproscan.properties /usr/local/interproscan-${IPSCAN_VERSION}/interproscan.properties
RUN chmod a+r /usr/local/interproscan-${IPSCAN_VERSION}/interproscan.properties
# Copy external software
COPY external/signalp-4.1b.Linux.tar.Z /tmp/
RUN tar zxf /tmp/signalp-4.1b.Linux.tar.Z -C /usr/local/interproscan-${IPSCAN_VERSION}/bin/signalp/4.1 --strip-components 1
COPY external/tmhmm-2.0c.Linux.tar.gz /tmp/
RUN tar zxf /tmp/tmhmm-2.0c.Linux.tar.gz -C /tmp && \
cp /tmp/tmhmm-2.0c/bin/decodeanhmm.Linux_x86_64 /usr/local/interproscan-${IPSCAN_VERSION}/bin/tmhmm/2.0c/decodeanhmm
COPY external/phobius101_linux.tar.gz /tmp/
RUN tar xzf /tmp/phobius101_linux.tar.gz -C /usr/local/interproscan-${IPSCAN_VERSION}/bin/phobius/1.01 --strip-components 3
RUN chmod -R a+rx /usr/local/interproscan-${IPSCAN_VERSION}/bin/*
RUN cd /usr/local/interproscan-${IPSCAN_VERSION}; rm -rf data
FROM biocorecrg/debian-perlbrew-pyenv3-java:buster
ARG IPSCAN_VERSION=5.72-103.0
ENV PATH="/usr/local/interproscan:${PATH}"
COPY --from=builder /usr/local/interproscan-${IPSCAN_VERSION} /usr/local/interproscan
WORKDIR /usr/local/interproscan
# Extra packages
RUN apt-get update; apt-get install -y libdw1 libpcre3
RUN cd /lib/x86_64-linux-gnu; ln -s libpcre.so.3 libpcre.so
# Clean cache
RUN apt-get clean
RUN set -x; rm -rf /var/lib/apt/lists/*