update version

Author: toniher

Dockerfile

@@ -1,6 +1,6 @@
 FROM biocorecrg/debian-perlbrew-pyenv3-java:buster AS builder
 
-ARG IPSCAN_VERSION=5.52-86.0
+ARG IPSCAN_VERSION=5.54-87.0
 
 # Install InterPro
 
@@ -35,7 +35,7 @@ FROM biocorecrg/debian-perlbrew-pyenv3-java:buster
 # File Author / Maintainer
 MAINTAINER Toni Hermoso Pulido <[email protected]>
 
-ARG IPSCAN_VERSION=5.52-86.0
+ARG IPSCAN_VERSION=5.54-87.0
 
 ENV PATH "/usr/local/interproscan:${PATH}"
 

Dockerfile.open

@@ -1,6 +1,6 @@
 FROM biocorecrg/debian-perlbrew-pyenv3-java:buster AS builder
 
-ARG IPSCAN_VERSION=5.52-86.0
+ARG IPSCAN_VERSION=5.54-87.0
 
 # Install InterPro
 
@@ -22,7 +22,7 @@ FROM biocorecrg/debian-perlbrew-pyenv3-java:buster
 # File Author / Maintainer
 MAINTAINER Toni Hermoso Pulido <[email protected]> 
 
-ARG IPSCAN_VERSION=5.52-86.0
+ARG IPSCAN_VERSION=5.54-87.0
 
 ENV PATH "/usr/local/interproscan:${PATH}"
 

README.md

@@ -23,11 +23,11 @@ It is important to ensure that program and data versions match and that this is
 ## Building from Docker recipes
 
     # With privative software
-    docker build -t iprscan:5.52-86.0 -f Dockerfile .
-    sudo singularity build iprscan-5.52-86.0.sif docker-daemon://iprscan:5.52-86.0
+    docker build -t iprscan:5.54-87.0 -f Dockerfile .
+    sudo singularity build iprscan-5.54-87.0.sif docker-daemon://iprscan:5.54-87.0
     # Without privative software
-    docker build -t iprscan-open:5.52-86.0 -f Dockerfile.open .
-    sudo singularity build iprscan-5.52-86.0.open.sif docker-daemon://iprscan-open:5.52-86.0
+    docker build -t iprscan-open:5.54-87.0 -f Dockerfile.open .
+    sudo singularity build iprscan-5.54-87.0.open.sif docker-daemon://iprscan-open:5.54-87.0
 
 You can avoid using ```sudo``` with ```--fakeroot``` Singularity build option.
 
@@ -37,13 +37,13 @@ For running the container images, it is mandatory to mount a data directory that
 
 ```
 # Docker
-docker run --volume /path/to/data:/usr/local/interproscan/data --volume /path/to/scratch:/scratch -t biocorecrg/interproscan:5.52-86.0 /usr/local/interproscan/interproscan.sh -i /scratch/test.fa --goterms --iprlookup --pathways -o /scratch/out_interpro -f TSV
+docker run --volume /path/to/data:/usr/local/interproscan/data --volume /path/to/scratch:/scratch -t biocorecrg/interproscan:5.54-87.0 /usr/local/interproscan/interproscan.sh -i /scratch/test.fa --goterms --iprlookup --pathways -o /scratch/out_interpro -f TSV
 
 # Singularity
-singularity exec -B /path/to/data:/usr/local/interproscan/data -e iprscan-5.52-86.0.open.sif /usr/local/interproscan/interproscan.sh -i /path/to/test2.fa --goterms --iprlookup --pathways -o /path/to/out_interpro -f TSV
+singularity exec -B /path/to/data:/usr/local/interproscan/data -e iprscan-5.54-87.0.open.sif /usr/local/interproscan/interproscan.sh -i /path/to/test2.fa --goterms --iprlookup --pathways -o /path/to/out_interpro -f TSV
 ```
 
 ## NOTES
 
-* Moreover, keep into account that a user with suitable permissions may need first to index ```/usr/local/interproscan/data``` directory (e.g., with ```python3 /usr/local/interproscan/initial_setup.py```). You can use the very container images. Details here: https://interproscan-docs.readthedocs.io/en/5.52-86.0/HowToRun.html
+* Moreover, keep into account that a user with suitable permissions may need first to index ```/usr/local/interproscan/data``` directory (e.g., with ```python3 /usr/local/interproscan/initial_setup.py```). You can use the very container images. Details here: https://interproscan-docs.readthedocs.io/en/5.54-87.0/HowToRun.html
 * Depending on your setup, you may need to change ```SINGULARITY_TMPDIR``` (and ```SINGULARITY_CACHEDIR```) environment variables for pointing to a location with enough space. More details at: https://singularity.hpcng.org/admin-docs/master/installation.html

interproscan.properties

@@ -124,10 +124,10 @@ panther.hmm.path=${data.directory}/panther/15.0/panther.hmm
 panther.names.tab=${data.directory}/panther/15.0/names.tab
 
 # PFam
-pfam-a.hmm.path=${data.directory}/pfam/33.1/pfam_a.hmm
-pfam-a.seed.path=${data.directory}/pfam/33.1/pfam_a.seed
-pfam-clans.path=${data.directory}/pfam/33.1/pfam_clans
-pfam-a.dat.path=${data.directory}/pfam/33.1/pfam_a.dat
+pfam-a.hmm.path=${data.directory}/pfam/34.0/pfam_a.hmm
+pfam-a.seed.path=${data.directory}/pfam/34.0/pfam_a.seed
+pfam-clans.path=${data.directory}/pfam/34.0/pfam_clans
+pfam-a.dat.path=${data.directory}/pfam/34.0/pfam_a.dat
 
 ##
 
@@ -255,7 +255,7 @@ kvstore.entrydb.path=work/kvs/idb
 kvstore.delay.milliseconds=200
 
 # Instructs I5 to completely clean up after itself - leave set to true.
-delete.temporary.directory.on.completion=false
+delete.temporary.directory.on.completion=true
 
 ##
 ## Broker TCP Connection