From 85e5aed9a7ec68ce3e084fa9451a85ffb47246a8 Mon Sep 17 00:00:00 2001 From: Luca Cozzuto Date: Mon, 2 Dec 2024 10:45:19 +0100 Subject: [PATCH] Update README.md --- README.md | 22 +--------------------- 1 file changed, 1 insertion(+), 21 deletions(-) diff --git a/README.md b/README.md index 188c355..fcf3df7 100644 --- a/README.md +++ b/README.md @@ -30,29 +30,9 @@ Please install nextflow and singularity or docker before. Then download the repo: ``` -git clone --depth 1 --recurse-submodules https://github.com/biocorecrg/MOP4.git +git clone --recurse-submodules https://github.com/biocorecrg/master_of_pores.git ``` -You can use INSTALL.sh to download the version 3.4.5 of guppy or you can replace it with the version you prefer. Please consider that the support of VBZ compression of fast5 started with version 3.4.X. - -``` -cd MOP4; sh INSTALL.sh -``` - -## Testing -You can replace ```-with-singularity``` with ```-with-docker``` if you want to use the docker engine. - -``` -cd mop_preprocess -nextflow run mop_preprocess.nf -with-singularity -bg -profile local -params-file params.yaml > log -``` - -## Upgrading -To upgrade the tool you can type: - -``` -git pull --recurse-submodules -``` ## Documentation The documentation is available at [https://biocorecrg.github.io/MOP4/](https://biocorecrg.github.io/MOP4/)