From e31882610102ad50eb5bfe625248df184a056451 Mon Sep 17 00:00:00 2001
From: Toni Hermoso Pulido <toni.hermoso@crg.eu>
Date: Tue, 3 Dec 2024 18:34:42 +0100
Subject: [PATCH] copy only site

---
 .github/workflows/docs.yml | 2 +-
 docs/_config.yml           | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml
index c4520bb..a62bdde 100644
--- a/.github/workflows/docs.yml
+++ b/.github/workflows/docs.yml
@@ -30,7 +30,7 @@ jobs:
     - name: Copy file
       run: |
         mkdir -p ./gh-pages/${{ github.ref_name }}/ \
-        && cp -pr ${{ github.ref_name }}/docs/* ./gh-pages/${{ github.ref_name }}/
+        && cp -pr ${{ github.ref_name }}/docs/_site/* ./gh-pages/${{ github.ref_name }}/
     - name: Deploy to GitHub Pages
       uses: peaceiris/actions-gh-pages@v4
       with:
diff --git a/docs/_config.yml b/docs/_config.yml
index f514158..7c14cd1 100644
--- a/docs/_config.yml
+++ b/docs/_config.yml
@@ -1,6 +1,6 @@
 title: Master of Pores
 description: Nextflow pipeline for analysis of Nanopore data from direct RNA sequencing.
-url: "https://biocorecrg.github.io/master_of_pores/MOP1.1/"
+url: "https://biocorecrg.github.io/master_of_pores/MOP1.1"
 
 # Build settings
 markdown: kramdown