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Predicate type of OrganismTaxonToEnivronmentAssociation #1657

@mdrishti

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@mdrishti

Hi,

I am working on a schema for presenting bacterial mutation information using biolink-model.

For association of a bacteria to its habitat, I cam across the Association - OrganismTaxonToEnvironmentAssocitation (https://biolink.github.io/biolink-model/OrganismTaxonToEnvironmentAssociation/). However, I could not find a predicate/predicate type for the same.

For example, for a VariantToGeneAssociation, I have:

<https://www.ncbi.nlm.nih.gov/gene/1254481>
   rdfs:label "barA"^^xsd:string ;
   biolink:category biolink:Gene ;
   biolink:in_taxon <http://purl.obolibrary.org/obo/NCBITaxon_99287> ;
   biolink:has_sequence_variant <http://example.org/some-variant> .

now for the NCBITaxon_99287 mentioned above, I want to have something like:

<http://purl.obolibrary.org/obo/NCBITaxon_99287> 
   rdfs:label "Salmonella enterica subsp. enterica serovar Typhimurium str. LT2"^^xsd:string ;
   biolink:category biolink:OrganismTaxon ;
   sosa:hasSample <http://example.org/some-sample> ;
   _biolink:has_environment_ / _biolink:has_biome_ <https://w3id.org/gold.path/3924> .

However, for now, I could not find the right predicate (something like biolink:has_environment or biolink:has_biome to link biolink:OrganismTaxon to an environment, even though biolink:OrganismTaxonToEnvironmentAssociation exists in biolink-model. I would appreciate if you can help me resolve this.

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