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<!DOCTYPE html>
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<title>Index — BioSimulators test suite 0.2 documentation</title>
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<h1 id="index">Index</h1>
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<a href="#_"><strong>_</strong></a>
| <a href="#A"><strong>A</strong></a>
| <a href="#B"><strong>B</strong></a>
| <a href="#C"><strong>C</strong></a>
| <a href="#D"><strong>D</strong></a>
| <a href="#E"><strong>E</strong></a>
| <a href="#F"><strong>F</strong></a>
| <a href="#G"><strong>G</strong></a>
| <a href="#H"><strong>H</strong></a>
| <a href="#I"><strong>I</strong></a>
| <a href="#L"><strong>L</strong></a>
| <a href="#M"><strong>M</strong></a>
| <a href="#N"><strong>N</strong></a>
| <a href="#O"><strong>O</strong></a>
| <a href="#P"><strong>P</strong></a>
| <a href="#R"><strong>R</strong></a>
| <a href="#S"><strong>S</strong></a>
| <a href="#T"><strong>T</strong></a>
| <a href="#U"><strong>U</strong></a>
| <a href="#V"><strong>V</strong></a>
| <a href="#W"><strong>W</strong></a>
</div>
<h2 id="_">_</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.data_model.AlertType.__format__">__format__() (biosimulators_test_suite.data_model.AlertType method)</a>
<ul>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.data_model.OutputMedium.__format__">(biosimulators_test_suite.data_model.OutputMedium method)</a>
</li>
<li><a href="source/biosimulators_test_suite.results.html#biosimulators_test_suite.results.data_model.TestCaseResultType.__format__">(biosimulators_test_suite.results.data_model.TestCaseResultType method)</a>
</li>
</ul></li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.combine_archive.CombineArchiveHasSedDocumentsInNestedDirectories._archive_has_master">_archive_has_master (biosimulators_test_suite.test_case.combine_archive.CombineArchiveHasSedDocumentsInNestedDirectories attribute)</a>
<ul>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.combine_archive.CombineArchiveHasSedDocumentsWithSameNamesInDifferentInNestedDirectories._archive_has_master">(biosimulators_test_suite.test_case.combine_archive.CombineArchiveHasSedDocumentsWithSameNamesInDifferentInNestedDirectories attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.combine_archive.WhenACombineArchiveHasAMasterFileSimulatorOnlyExecutesThisFile._archive_has_master">(biosimulators_test_suite.test_case.combine_archive.WhenACombineArchiveHasAMasterFileSimulatorOnlyExecutesThisFile attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.combine_archive.WhenACombineArchiveHasNoMasterFileSimulatorExecutesAllSedDocuments._archive_has_master">(biosimulators_test_suite.test_case.combine_archive.WhenACombineArchiveHasNoMasterFileSimulatorExecutesAllSedDocuments attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.ConfigurableMasterCombineArchiveTestCase._archive_has_master">(biosimulators_test_suite.test_case.published_project.ConfigurableMasterCombineArchiveTestCase attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.SingleMasterSedDocumentCombineArchiveTestCase._archive_has_master">(biosimulators_test_suite.test_case.published_project.SingleMasterSedDocumentCombineArchiveTestCase attribute)</a>
</li>
</ul></li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.combine_archive.CombineArchiveTestCase._expected_report_ids">_expected_report_ids (biosimulators_test_suite.test_case.combine_archive.CombineArchiveTestCase attribute)</a>
<ul>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.ConfigurableMasterCombineArchiveTestCase._expected_report_ids">(biosimulators_test_suite.test_case.published_project.ConfigurableMasterCombineArchiveTestCase attribute)</a>
</li>
</ul></li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.sedml.SimulatorSupportsMultipleTasksPerSedDocument._expected_reports">_expected_reports (biosimulators_test_suite.test_case.sedml.SimulatorSupportsMultipleTasksPerSedDocument attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.ConfigurableMasterCombineArchiveTestCase._keep_one_task_one_report">_keep_one_task_one_report (biosimulators_test_suite.test_case.published_project.ConfigurableMasterCombineArchiveTestCase attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.ConfigurableMasterCombineArchiveTestCase._model_change_filter">_model_change_filter (biosimulators_test_suite.test_case.published_project.ConfigurableMasterCombineArchiveTestCase attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.SyntheticCombineArchiveTestCase._published_projects_test_case">_published_projects_test_case (biosimulators_test_suite.test_case.published_project.SyntheticCombineArchiveTestCase attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.ConfigurableMasterCombineArchiveTestCase._remove_algorithm_parameter_changes">_remove_algorithm_parameter_changes (biosimulators_test_suite.test_case.published_project.ConfigurableMasterCombineArchiveTestCase attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.ConfigurableMasterCombineArchiveTestCase._remove_plots">_remove_plots (biosimulators_test_suite.test_case.published_project.ConfigurableMasterCombineArchiveTestCase attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.ConfigurableMasterCombineArchiveTestCase._use_single_variable_data_generators">_use_single_variable_data_generators (biosimulators_test_suite.test_case.published_project.ConfigurableMasterCombineArchiveTestCase attribute)</a>
</li>
</ul></td>
</tr></table>
<h2 id="A">A</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.SimulatorCanExecutePublishedProject.a_tol">a_tol (biosimulators_test_suite.test_case.published_project.SimulatorCanExecutePublishedProject attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.exec_gh_action.ValidateCommitSimulatorGitHubAction.add_comment_to_issue">add_comment_to_issue() (biosimulators_test_suite.exec_gh_action.ValidateCommitSimulatorGitHubAction class method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.UniformTimeCourseTestCase.add_time_data_set">add_time_data_set() (biosimulators_test_suite.test_case.published_project.UniformTimeCourseTestCase method)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.data_model.AlertType">AlertType (class in biosimulators_test_suite.data_model)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.exec_cli.App">App (class in biosimulators_test_suite.exec_cli)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.exec_cli.App.Meta">App.Meta (class in biosimulators_test_suite.exec_cli)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.ExpectedResultOfSyntheticArchive.archive">archive (biosimulators_test_suite.test_case.published_project.ExpectedResultOfSyntheticArchive attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.utils.are_array_shapes_equivalent">are_array_shapes_equivalent() (in module biosimulators_test_suite.test_case.utils)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.exec_cli.BaseController.Meta.arguments">arguments (biosimulators_test_suite.exec_cli.BaseController.Meta attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.SimulatorCanExecutePublishedProject.assert_no_extra_datasets">assert_no_extra_datasets (biosimulators_test_suite.test_case.published_project.SimulatorCanExecutePublishedProject attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.SimulatorCanExecutePublishedProject.assert_no_extra_plots">assert_no_extra_plots (biosimulators_test_suite.test_case.published_project.SimulatorCanExecutePublishedProject attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.SimulatorCanExecutePublishedProject.assert_no_extra_reports">assert_no_extra_reports (biosimulators_test_suite.test_case.published_project.SimulatorCanExecutePublishedProject attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.SimulatorCanExecutePublishedProject.assert_no_missing_plots">assert_no_missing_plots (biosimulators_test_suite.test_case.published_project.SimulatorCanExecutePublishedProject attribute)</a>
</li>
</ul></td>
</tr></table>
<h2 id="B">B</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.exec_cli.App.Meta.base_controller">base_controller (biosimulators_test_suite.exec_cli.App.Meta attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.exec_cli.BaseController">BaseController (class in biosimulators_test_suite.exec_cli)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.exec_cli.BaseController.Meta">BaseController.Meta (class in biosimulators_test_suite.exec_cli)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.config.Config.biosimulators_api_client_id">biosimulators_api_client_id (biosimulators_test_suite.config.Config attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.config.Config.biosimulators_api_client_secret">biosimulators_api_client_secret (biosimulators_test_suite.config.Config attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.config.Config.biosimulators_audience">biosimulators_audience (biosimulators_test_suite.config.Config attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.config.Config.biosimulators_auth_endpoint">biosimulators_auth_endpoint (biosimulators_test_suite.config.Config attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.config.Config.biosimulators_curator_gh_ids">biosimulators_curator_gh_ids (biosimulators_test_suite.config.Config attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.config.Config.biosimulators_default_image_version">biosimulators_default_image_version (biosimulators_test_suite.config.Config attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.config.Config.biosimulators_default_specifications_version">biosimulators_default_specifications_version (biosimulators_test_suite.config.Config attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.config.Config.biosimulators_dev_api_endpoint">biosimulators_dev_api_endpoint (biosimulators_test_suite.config.Config attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.config.Config.biosimulators_docker_image_url_pattern">biosimulators_docker_image_url_pattern (biosimulators_test_suite.config.Config attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.config.Config.biosimulators_docker_registry_token">biosimulators_docker_registry_token (biosimulators_test_suite.config.Config attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.config.Config.biosimulators_docker_registry_url">biosimulators_docker_registry_url (biosimulators_test_suite.config.Config attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.config.Config.biosimulators_docker_registry_username">biosimulators_docker_registry_username (biosimulators_test_suite.config.Config attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.config.Config.biosimulators_prod_api_endpoint">biosimulators_prod_api_endpoint (biosimulators_test_suite.config.Config attribute)</a>
</li>
<li>
biosimulators_test_suite
<ul>
<li><a href="source/biosimulators_test_suite.html#module-biosimulators_test_suite">module</a>
</li>
</ul></li>
<li>
biosimulators_test_suite.config
<ul>
<li><a href="source/biosimulators_test_suite.html#module-biosimulators_test_suite.config">module</a>
</li>
</ul></li>
<li>
biosimulators_test_suite.data_model
<ul>
<li><a href="source/biosimulators_test_suite.html#module-biosimulators_test_suite.data_model">module</a>
</li>
</ul></li>
<li>
biosimulators_test_suite.exceptions
<ul>
<li><a href="source/biosimulators_test_suite.html#module-biosimulators_test_suite.exceptions">module</a>
</li>
</ul></li>
<li>
biosimulators_test_suite.exec_cli
<ul>
<li><a href="source/biosimulators_test_suite.html#module-biosimulators_test_suite.exec_cli">module</a>
</li>
</ul></li>
<li>
biosimulators_test_suite.exec_core
<ul>
<li><a href="source/biosimulators_test_suite.html#module-biosimulators_test_suite.exec_core">module</a>
</li>
</ul></li>
<li>
biosimulators_test_suite.exec_gh_action
<ul>
<li><a href="source/biosimulators_test_suite.html#module-biosimulators_test_suite.exec_gh_action">module</a>
</li>
</ul></li>
<li>
biosimulators_test_suite.results
<ul>
<li><a href="source/biosimulators_test_suite.results.html#module-biosimulators_test_suite.results">module</a>
</li>
</ul></li>
<li>
biosimulators_test_suite.results.data_model
<ul>
<li><a href="source/biosimulators_test_suite.results.html#module-biosimulators_test_suite.results.data_model">module</a>
</li>
</ul></li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li>
biosimulators_test_suite.results.io
<ul>
<li><a href="source/biosimulators_test_suite.results.html#module-biosimulators_test_suite.results.io">module</a>
</li>
</ul></li>
<li>
biosimulators_test_suite.test_case
<ul>
<li><a href="source/biosimulators_test_suite.test_case.html#module-biosimulators_test_suite.test_case">module</a>
</li>
</ul></li>
<li>
biosimulators_test_suite.test_case.cli
<ul>
<li><a href="source/biosimulators_test_suite.test_case.html#module-biosimulators_test_suite.test_case.cli">module</a>
</li>
</ul></li>
<li>
biosimulators_test_suite.test_case.combine_archive
<ul>
<li><a href="source/biosimulators_test_suite.test_case.html#module-biosimulators_test_suite.test_case.combine_archive">module</a>
</li>
</ul></li>
<li>
biosimulators_test_suite.test_case.docker_image
<ul>
<li><a href="source/biosimulators_test_suite.test_case.html#module-biosimulators_test_suite.test_case.docker_image">module</a>
</li>
</ul></li>
<li>
biosimulators_test_suite.test_case.log
<ul>
<li><a href="source/biosimulators_test_suite.test_case.html#module-biosimulators_test_suite.test_case.log">module</a>
</li>
</ul></li>
<li>
biosimulators_test_suite.test_case.published_project
<ul>
<li><a href="source/biosimulators_test_suite.test_case.html#module-biosimulators_test_suite.test_case.published_project">module</a>
</li>
</ul></li>
<li>
biosimulators_test_suite.test_case.results_report
<ul>
<li><a href="source/biosimulators_test_suite.test_case.html#module-biosimulators_test_suite.test_case.results_report">module</a>
</li>
</ul></li>
<li>
biosimulators_test_suite.test_case.sedml
<ul>
<li><a href="source/biosimulators_test_suite.test_case.html#module-biosimulators_test_suite.test_case.sedml">module</a>
</li>
</ul></li>
<li>
biosimulators_test_suite.test_case.utils
<ul>
<li><a href="source/biosimulators_test_suite.test_case.html#module-biosimulators_test_suite.test_case.utils">module</a>
</li>
</ul></li>
<li>
biosimulators_test_suite.test_warnings
<ul>
<li><a href="source/biosimulators_test_suite.html#module-biosimulators_test_suite.test_warnings">module</a>
</li>
</ul></li>
<li>
biosimulators_test_suite.utils
<ul>
<li><a href="source/biosimulators_test_suite.html#module-biosimulators_test_suite.utils">module</a>
</li>
</ul></li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.combine_archive.CombineArchiveTestCase.build_synthetic_archives">build_synthetic_archives() (biosimulators_test_suite.test_case.combine_archive.CombineArchiveTestCase method)</a>
<ul>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.ConfigurableMasterCombineArchiveTestCase.build_synthetic_archives">(biosimulators_test_suite.test_case.published_project.ConfigurableMasterCombineArchiveTestCase method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.SyntheticCombineArchiveTestCase.build_synthetic_archives">(biosimulators_test_suite.test_case.published_project.SyntheticCombineArchiveTestCase method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.UniformTimeCourseTestCase.build_synthetic_archives">(biosimulators_test_suite.test_case.published_project.UniformTimeCourseTestCase method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.sedml.SimulatorSupportsAlgorithmParameters.build_synthetic_archives">(biosimulators_test_suite.test_case.sedml.SimulatorSupportsAlgorithmParameters method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.sedml.SimulatorSupportsModelAttributeChanges.build_synthetic_archives">(biosimulators_test_suite.test_case.sedml.SimulatorSupportsModelAttributeChanges method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.sedml.SimulatorSupportsMultipleReportsPerSedDocument.build_synthetic_archives">(biosimulators_test_suite.test_case.sedml.SimulatorSupportsMultipleReportsPerSedDocument method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.sedml.SimulatorSupportsMultipleTasksPerSedDocument.build_synthetic_archives">(biosimulators_test_suite.test_case.sedml.SimulatorSupportsMultipleTasksPerSedDocument method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.sedml.SimulatorSupportsSubstitutingAlgorithms.build_synthetic_archives">(biosimulators_test_suite.test_case.sedml.SimulatorSupportsSubstitutingAlgorithms method)</a>
</li>
</ul></li>
</ul></td>
</tr></table>
<h2 id="C">C</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_test_suite.results.html#biosimulators_test_suite.results.data_model.TestCaseResult.case">case (biosimulators_test_suite.results.data_model.TestCaseResult attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.exec_core.SimulatorValidator.cases">cases (biosimulators_test_suite.exec_core.SimulatorValidator attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.exec_core.SimulatorValidator.cli">cli (biosimulators_test_suite.exec_core.SimulatorValidator attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.cli.CliDescribesSupportedEnvironmentVariablesInline">CliDescribesSupportedEnvironmentVariablesInline (class in biosimulators_test_suite.test_case.cli)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.cli.CliDisplaysHelpInline">CliDisplaysHelpInline (class in biosimulators_test_suite.test_case.cli)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.cli.CliDisplaysVersionInformationInline">CliDisplaysVersionInformationInline (class in biosimulators_test_suite.test_case.cli)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.combine_archive.CombineArchiveHasSedDocumentsInNestedDirectories">CombineArchiveHasSedDocumentsInNestedDirectories (class in biosimulators_test_suite.test_case.combine_archive)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.combine_archive.CombineArchiveHasSedDocumentsWithSameNamesInDifferentInNestedDirectories">CombineArchiveHasSedDocumentsWithSameNamesInDifferentInNestedDirectories (class in biosimulators_test_suite.test_case.combine_archive)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.combine_archive.CombineArchiveTestCase">CombineArchiveTestCase (class in biosimulators_test_suite.test_case.combine_archive)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.exec_gh_action.ValidateCommitSimulatorGitHubAction.commit_simulator">commit_simulator() (biosimulators_test_suite.exec_gh_action.ValidateCommitSimulatorGitHubAction method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.SimulatorCanExecutePublishedProject.compatible_with_specifications">compatible_with_specifications() (biosimulators_test_suite.test_case.published_project.SimulatorCanExecutePublishedProject method)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.exec_gh_action.ValidateCommitSimulatorGitHubAction.config">config (biosimulators_test_suite.exec_gh_action.ValidateCommitSimulatorGitHubAction attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.config.Config">Config (class in biosimulators_test_suite.config)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.ConfigurableMasterCombineArchiveTestCase">ConfigurableMasterCombineArchiveTestCase (class in biosimulators_test_suite.test_case.published_project)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.data_model.OutputMedium.console">console (biosimulators_test_suite.data_model.OutputMedium attribute)</a>
</li>
</ul></td>
</tr></table>
<h2 id="D">D</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.docker_image.DeclaresSupportedEnvironmentVariables">DeclaresSupportedEnvironmentVariables (class in biosimulators_test_suite.test_case.docker_image)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.docker_image.DefaultUserIsRoot">DefaultUserIsRoot (class in biosimulators_test_suite.test_case.docker_image)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.data_model.TestCase.description">description (biosimulators_test_suite.data_model.TestCase attribute)</a>
<ul>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.exec_cli.BaseController.Meta.description">(biosimulators_test_suite.exec_cli.BaseController.Meta attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.SyntheticCombineArchiveTestCase.description">(biosimulators_test_suite.test_case.published_project.SyntheticCombineArchiveTestCase attribute)</a>
</li>
</ul></li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.config.Config.docker_hub_token">docker_hub_token (biosimulators_test_suite.config.Config attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.config.Config.docker_hub_username">docker_hub_username (biosimulators_test_suite.config.Config attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.exec_gh_action.ValidateCommitSimulatorGitHubAction.does_submission_have_approved_label">does_submission_have_approved_label() (biosimulators_test_suite.exec_gh_action.ValidateCommitSimulatorGitHubAction method)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.exec_core.SimulatorValidator.dry_run">dry_run (biosimulators_test_suite.exec_core.SimulatorValidator attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.results.html#biosimulators_test_suite.results.data_model.TestCaseResult.duration">duration (biosimulators_test_suite.results.data_model.TestCaseResult attribute)</a>
</li>
</ul></td>
</tr></table>
<h2 id="E">E</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.ExpectedResultOfSyntheticArchive.environment">environment (biosimulators_test_suite.test_case.published_project.ExpectedResultOfSyntheticArchive attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.data_model.TestCase.eval">eval() (biosimulators_test_suite.data_model.TestCase method)</a>
<ul>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.cli.CliDescribesSupportedEnvironmentVariablesInline.eval">(biosimulators_test_suite.test_case.cli.CliDescribesSupportedEnvironmentVariablesInline method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.cli.CliDisplaysHelpInline.eval">(biosimulators_test_suite.test_case.cli.CliDisplaysHelpInline method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.cli.CliDisplaysVersionInformationInline.eval">(biosimulators_test_suite.test_case.cli.CliDisplaysVersionInformationInline method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.docker_image.DeclaresSupportedEnvironmentVariables.eval">(biosimulators_test_suite.test_case.docker_image.DeclaresSupportedEnvironmentVariables method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.docker_image.DefaultUserIsRoot.eval">(biosimulators_test_suite.test_case.docker_image.DefaultUserIsRoot method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.docker_image.HasBioContainersLabels.eval">(biosimulators_test_suite.test_case.docker_image.HasBioContainersLabels method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.docker_image.HasOciLabels.eval">(biosimulators_test_suite.test_case.docker_image.HasOciLabels method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.SimulatorCanExecutePublishedProject.eval">(biosimulators_test_suite.test_case.published_project.SimulatorCanExecutePublishedProject method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.SyntheticCombineArchiveTestCase.eval">(biosimulators_test_suite.test_case.published_project.SyntheticCombineArchiveTestCase method)</a>
</li>
</ul></li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.exec_core.SimulatorValidator.eval_case">eval_case() (biosimulators_test_suite.exec_core.SimulatorValidator method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.combine_archive.CombineArchiveTestCase.eval_outputs">eval_outputs() (biosimulators_test_suite.test_case.combine_archive.CombineArchiveTestCase method)</a>
<ul>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.log.LoggingTestCase.eval_outputs">(biosimulators_test_suite.test_case.log.LoggingTestCase method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.SyntheticCombineArchiveTestCase.eval_outputs">(biosimulators_test_suite.test_case.published_project.SyntheticCombineArchiveTestCase method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.UniformTimeCourseTestCase.eval_outputs">(biosimulators_test_suite.test_case.published_project.UniformTimeCourseTestCase method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.results_report.SimulatorGeneratesReportsOfSimulationResults.eval_outputs">(biosimulators_test_suite.test_case.results_report.SimulatorGeneratesReportsOfSimulationResults method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.sedml.SimulatorProducesReportsWithCuratedNumberOfDimensions.eval_outputs">(biosimulators_test_suite.test_case.sedml.SimulatorProducesReportsWithCuratedNumberOfDimensions method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.sedml.SimulatorSupportsModelsSimulationsTasksDataGeneratorsAndReports.eval_outputs">(biosimulators_test_suite.test_case.sedml.SimulatorSupportsModelsSimulationsTasksDataGeneratorsAndReports method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.sedml.SimulatorSupportsMultipleReportsPerSedDocument.eval_outputs">(biosimulators_test_suite.test_case.sedml.SimulatorSupportsMultipleReportsPerSedDocument method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.sedml.SimulatorSupportsMultipleTasksPerSedDocument.eval_outputs">(biosimulators_test_suite.test_case.sedml.SimulatorSupportsMultipleTasksPerSedDocument method)</a>
</li>
</ul></li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.data_model.AlertType.exception">exception (biosimulators_test_suite.data_model.AlertType attribute)</a>
<ul>
<li><a href="source/biosimulators_test_suite.results.html#biosimulators_test_suite.results.data_model.TestCaseResult.exception">(biosimulators_test_suite.results.data_model.TestCaseResult attribute)</a>
</li>
</ul></li>
<li><a href="source/biosimulators_test_suite.results.html#biosimulators_test_suite.results.data_model.TestCaseResult.exception_traceback">exception_traceback (biosimulators_test_suite.results.data_model.TestCaseResult attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.exec_gh_action.ValidateCommitSimulatorGitHubAction.exec_core">exec_core() (biosimulators_test_suite.exec_gh_action.ValidateCommitSimulatorGitHubAction method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.SimulatorCanExecutePublishedProject.exec_sedml_docs_in_archive">exec_sedml_docs_in_archive() (biosimulators_test_suite.test_case.published_project.SimulatorCanExecutePublishedProject method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.docker_image.SingularityImageExecutesSimulationsSuccessfully.EXEC_WITH_SINGULARITY">EXEC_WITH_SINGULARITY (biosimulators_test_suite.test_case.docker_image.SingularityImageExecutesSimulationsSuccessfully attribute)</a>
<ul>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.SyntheticCombineArchiveTestCase.EXEC_WITH_SINGULARITY">(biosimulators_test_suite.test_case.published_project.SyntheticCombineArchiveTestCase attribute)</a>
</li>
</ul></li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.docker_image.HasBioContainersLabels.EXPECTED_LABELS">EXPECTED_LABELS (biosimulators_test_suite.test_case.docker_image.HasBioContainersLabels attribute)</a>
<ul>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.docker_image.HasOciLabels.EXPECTED_LABELS">(biosimulators_test_suite.test_case.docker_image.HasOciLabels attribute)</a>
</li>
</ul></li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.SimulatorCanExecutePublishedProject.expected_plots">expected_plots (biosimulators_test_suite.test_case.published_project.SimulatorCanExecutePublishedProject attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.SimulatorCanExecutePublishedProject.expected_reports">expected_reports (biosimulators_test_suite.test_case.published_project.SimulatorCanExecutePublishedProject attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.ExpectedResultOfSyntheticArchive">ExpectedResultOfSyntheticArchive (class in biosimulators_test_suite.test_case.published_project)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.data_model.ExpectedSedDataSet">ExpectedSedDataSet (class in biosimulators_test_suite.data_model)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.data_model.ExpectedSedPlot">ExpectedSedPlot (class in biosimulators_test_suite.data_model)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.data_model.ExpectedSedReport">ExpectedSedReport (class in biosimulators_test_suite.data_model)</a>
</li>
</ul></td>
</tr></table>
<h2 id="F">F</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_test_suite.results.html#biosimulators_test_suite.results.data_model.TestCaseResultType.failed">failed (biosimulators_test_suite.results.data_model.TestCaseResultType attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.SimulatorCanExecutePublishedProject.filename">filename (biosimulators_test_suite.test_case.published_project.SimulatorCanExecutePublishedProject attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.exec_core.SimulatorValidator.find_cases">find_cases() (biosimulators_test_suite.exec_core.SimulatorValidator method)</a>
<ul>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.find_cases">(in module biosimulators_test_suite.test_case.published_project)</a>
</li>
</ul></li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.exec_core.SimulatorValidator.find_cases_in_module">find_cases_in_module() (biosimulators_test_suite.exec_core.SimulatorValidator method)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.SimulatorCanExecutePublishedProject.from_dict">from_dict() (biosimulators_test_suite.test_case.published_project.SimulatorCanExecutePublishedProject method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.SimulatorCanExecutePublishedProject.from_json">from_json() (biosimulators_test_suite.test_case.published_project.SimulatorCanExecutePublishedProject method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.sedml.SimulatorSupportsRepeatedTasksWithFunctionalRanges.FUNCTONAL_RANGE_USES_VARIABLES">FUNCTONAL_RANGE_USES_VARIABLES (biosimulators_test_suite.test_case.sedml.SimulatorSupportsRepeatedTasksWithFunctionalRanges attribute)</a>
<ul>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.sedml.SimulatorSupportsRepeatedTasksWithFunctionalRangeVariables.FUNCTONAL_RANGE_USES_VARIABLES">(biosimulators_test_suite.test_case.sedml.SimulatorSupportsRepeatedTasksWithFunctionalRangeVariables attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.sedml.SimulatorSupportsRepeatedTasksWithNestedFunctionalRanges.FUNCTONAL_RANGE_USES_VARIABLES">(biosimulators_test_suite.test_case.sedml.SimulatorSupportsRepeatedTasksWithNestedFunctionalRanges attribute)</a>
</li>
</ul></li>
</ul></td>
</tr></table>
<h2 id="G">G</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.exec_gh_action.ValidateCommitSimulatorGitHubAction.get_auth_headers_for_biosimulations_api">get_auth_headers_for_biosimulations_api() (biosimulators_test_suite.exec_gh_action.ValidateCommitSimulatorGitHubAction method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.SimulatorCanExecutePublishedProject.get_description">get_description() (biosimulators_test_suite.test_case.published_project.SimulatorCanExecutePublishedProject method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.combine_archive.CombineArchiveTestCase.get_expected_reports">get_expected_reports() (biosimulators_test_suite.test_case.combine_archive.CombineArchiveTestCase method)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.exec_gh_action.ValidateCommitSimulatorGitHubAction.get_initial_message">get_initial_message() (biosimulators_test_suite.exec_gh_action.ValidateCommitSimulatorGitHubAction method)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.data_model.TestCase.get_simulator_docker_image">get_simulator_docker_image() (biosimulators_test_suite.data_model.TestCase method)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.utils.get_singularity_image_filename">get_singularity_image_filename() (in module biosimulators_test_suite.utils)</a>
</li>
<li><a href="source/biosimulators_test_suite.results.html#biosimulators_test_suite.results.data_model.TestResultsReport.gh_action_run">gh_action_run (biosimulators_test_suite.results.data_model.TestResultsReport attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.data_model.OutputMedium.gh_issue">gh_issue (biosimulators_test_suite.data_model.OutputMedium attribute)</a>
<ul>
<li><a href="source/biosimulators_test_suite.results.html#biosimulators_test_suite.results.data_model.TestResultsReport.gh_issue">(biosimulators_test_suite.results.data_model.TestResultsReport attribute)</a>
</li>
</ul></li>
</ul></td>
</tr></table>
<h2 id="H">H</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.exec_cli.App.Meta.handlers">handlers (biosimulators_test_suite.exec_cli.App.Meta attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.sedml.SimulatorSupportsRepeatedTasksWithFunctionalRangeVariables.HAS_CHANGES">HAS_CHANGES (biosimulators_test_suite.test_case.sedml.SimulatorSupportsRepeatedTasksWithFunctionalRangeVariables attribute)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.docker_image.HasBioContainersLabels">HasBioContainersLabels (class in biosimulators_test_suite.test_case.docker_image)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.docker_image.HasOciLabels">HasOciLabels (class in biosimulators_test_suite.test_case.docker_image)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.exec_cli.BaseController.Meta.help">help (biosimulators_test_suite.exec_cli.BaseController.Meta attribute)</a>
</li>
</ul></td>
</tr></table>
<h2 id="I">I</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.data_model.TestCase.id">id (biosimulators_test_suite.data_model.TestCase attribute)</a>
<ul>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.SimulatorCanExecutePublishedProject.id">(biosimulators_test_suite.test_case.published_project.SimulatorCanExecutePublishedProject attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.SyntheticCombineArchiveTestCase.id">(biosimulators_test_suite.test_case.published_project.SyntheticCombineArchiveTestCase attribute)</a>
</li>
</ul></li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.test_warnings.IgnoredTestCaseWarning">IgnoredTestCaseWarning</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.exceptions.InvalidOutputsException">InvalidOutputsException</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.test_warnings.InvalidOutputsWarning">InvalidOutputsWarning</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.log.LoggingTestCase.is_concrete">is_concrete() (biosimulators_test_suite.test_case.log.LoggingTestCase method)</a>
<ul>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.log.SimulatorReportsTheStatusOfTheExecutionOfCombineArchives.is_concrete">(biosimulators_test_suite.test_case.log.SimulatorReportsTheStatusOfTheExecutionOfCombineArchives method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.log.SimulatorReportsTheStatusOfTheExecutionOfSedDocuments.is_concrete">(biosimulators_test_suite.test_case.log.SimulatorReportsTheStatusOfTheExecutionOfSedDocuments method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.log.SimulatorReportsTheStatusOfTheExecutionOfSedOutputs.is_concrete">(biosimulators_test_suite.test_case.log.SimulatorReportsTheStatusOfTheExecutionOfSedOutputs method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.log.SimulatorReportsTheStatusOfTheExecutionOfSedTasks.is_concrete">(biosimulators_test_suite.test_case.log.SimulatorReportsTheStatusOfTheExecutionOfSedTasks method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.sedml.SimulatorSupportsRepeatedTasksWithFunctionalRanges.is_concrete">(biosimulators_test_suite.test_case.sedml.SimulatorSupportsRepeatedTasksWithFunctionalRanges method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.sedml.SimulatorSupportsRepeatedTasksWithFunctionalRangeVariables.is_concrete">(biosimulators_test_suite.test_case.sedml.SimulatorSupportsRepeatedTasksWithFunctionalRangeVariables method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.sedml.SimulatorSupportsRepeatedTasksWithLinearUniformRanges.is_concrete">(biosimulators_test_suite.test_case.sedml.SimulatorSupportsRepeatedTasksWithLinearUniformRanges method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.sedml.SimulatorSupportsRepeatedTasksWithLogarithmicUniformRanges.is_concrete">(biosimulators_test_suite.test_case.sedml.SimulatorSupportsRepeatedTasksWithLogarithmicUniformRanges method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.sedml.SimulatorSupportsRepeatedTasksWithMultipleSubTasks.is_concrete">(biosimulators_test_suite.test_case.sedml.SimulatorSupportsRepeatedTasksWithMultipleSubTasks method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.sedml.SimulatorSupportsRepeatedTasksWithNestedFunctionalRanges.is_concrete">(biosimulators_test_suite.test_case.sedml.SimulatorSupportsRepeatedTasksWithNestedFunctionalRanges method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.sedml.SimulatorSupportsRepeatedTasksWithNestedRepeatedTasks.is_concrete">(biosimulators_test_suite.test_case.sedml.SimulatorSupportsRepeatedTasksWithNestedRepeatedTasks method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.sedml.SimulatorSupportsRepeatedTasksWithSubTasksOfMixedTypes.is_concrete">(biosimulators_test_suite.test_case.sedml.SimulatorSupportsRepeatedTasksWithSubTasksOfMixedTypes method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.sedml.SimulatorSupportsRepeatedTasksWithVectorRanges.is_concrete">(biosimulators_test_suite.test_case.sedml.SimulatorSupportsRepeatedTasksWithVectorRanges method)</a>
</li>
</ul></li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.SyntheticCombineArchiveTestCase.is_curated_archive_suitable_for_building_synthetic_archive">is_curated_archive_suitable_for_building_synthetic_archive() (biosimulators_test_suite.test_case.published_project.SyntheticCombineArchiveTestCase method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.SyntheticCombineArchiveTestCase.is_curated_sed_algorithm_suitable_for_building_synthetic_archive">is_curated_sed_algorithm_suitable_for_building_synthetic_archive() (biosimulators_test_suite.test_case.published_project.SyntheticCombineArchiveTestCase method)</a>
<ul>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.sedml.SimulatorProducesReportsWithCuratedNumberOfDimensions.is_curated_sed_algorithm_suitable_for_building_synthetic_archive">(biosimulators_test_suite.test_case.sedml.SimulatorProducesReportsWithCuratedNumberOfDimensions method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.sedml.SimulatorSupportsAlgorithmParameters.is_curated_sed_algorithm_suitable_for_building_synthetic_archive">(biosimulators_test_suite.test_case.sedml.SimulatorSupportsAlgorithmParameters method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.sedml.SimulatorSupportsSubstitutingAlgorithms.is_curated_sed_algorithm_suitable_for_building_synthetic_archive">(biosimulators_test_suite.test_case.sedml.SimulatorSupportsSubstitutingAlgorithms method)</a>
</li>
</ul></li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.SyntheticCombineArchiveTestCase.is_curated_sed_doc_suitable_for_building_synthetic_archive">is_curated_sed_doc_suitable_for_building_synthetic_archive() (biosimulators_test_suite.test_case.published_project.SyntheticCombineArchiveTestCase method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.SyntheticCombineArchiveTestCase.is_curated_sed_model_suitable_for_building_synthetic_archive">is_curated_sed_model_suitable_for_building_synthetic_archive() (biosimulators_test_suite.test_case.published_project.SyntheticCombineArchiveTestCase method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.SyntheticCombineArchiveTestCase.is_curated_sed_report_suitable_for_building_synthetic_archive">is_curated_sed_report_suitable_for_building_synthetic_archive() (biosimulators_test_suite.test_case.published_project.SyntheticCombineArchiveTestCase method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.SyntheticCombineArchiveTestCase.is_curated_sed_simulation_suitable_for_building_synthetic_archive">is_curated_sed_simulation_suitable_for_building_synthetic_archive() (biosimulators_test_suite.test_case.published_project.SyntheticCombineArchiveTestCase method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.SyntheticCombineArchiveTestCase.is_curated_sed_task_suitable_for_building_synthetic_archive">is_curated_sed_task_suitable_for_building_synthetic_archive() (biosimulators_test_suite.test_case.published_project.SyntheticCombineArchiveTestCase method)</a>
<ul>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.UniformTimeCourseTestCase.is_curated_sed_task_suitable_for_building_synthetic_archive">(biosimulators_test_suite.test_case.published_project.UniformTimeCourseTestCase method)</a>
</li>
</ul></li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.exec_gh_action.ValidateCommitSimulatorGitHubAction.is_other_version_of_simulator_validated">is_other_version_of_simulator_validated() (biosimulators_test_suite.exec_gh_action.ValidateCommitSimulatorGitHubAction method)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.exec_gh_action.ValidateCommitSimulatorGitHubAction.is_simulator_approved">is_simulator_approved() (biosimulators_test_suite.exec_gh_action.ValidateCommitSimulatorGitHubAction method)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.exec_gh_action.ValidateCommitSimulatorGitHubAction.is_submission_latest_version_of_simulator">is_submission_latest_version_of_simulator() (biosimulators_test_suite.exec_gh_action.ValidateCommitSimulatorGitHubAction method)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.ExpectedResultOfSyntheticArchive.is_success_expected">is_success_expected (biosimulators_test_suite.test_case.published_project.ExpectedResultOfSyntheticArchive attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.exec_gh_action.ValidateCommitSimulatorGitHubAction.issue_number">issue_number (biosimulators_test_suite.exec_gh_action.ValidateCommitSimulatorGitHubAction attribute)</a>
</li>
</ul></td>
</tr></table>
<h2 id="L">L</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.exec_cli.App.Meta.label">label (biosimulators_test_suite.exec_cli.App.Meta attribute)</a>
<ul>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.exec_cli.BaseController.Meta.label">(biosimulators_test_suite.exec_cli.BaseController.Meta attribute)</a>
</li>
</ul></li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_test_suite.results.html#biosimulators_test_suite.results.data_model.TestCaseResult.log">log (biosimulators_test_suite.results.data_model.TestCaseResult attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.exec_core.SimulatorValidator.log_std_out_err">log_std_out_err (biosimulators_test_suite.exec_core.SimulatorValidator attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.log.LoggingTestCase">LoggingTestCase (class in biosimulators_test_suite.test_case.log)</a>
</li>
</ul></td>
</tr></table>
<h2 id="M">M</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_test_suite.html#biosimulators_test_suite.exec_cli.main">main() (in module biosimulators_test_suite.exec_cli)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.published_project.SimulatorCanExecutePublishedProject.minimum_number_of_synthetic_uniform_time_steps">minimum_number_of_synthetic_uniform_time_steps (biosimulators_test_suite.test_case.published_project.SimulatorCanExecutePublishedProject attribute)</a>
</li>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.sedml.SimulatorSupportsRepeatedTasksWithNestedRepeatedTasks.MIXED_SUB_TASK_TYPES">MIXED_SUB_TASK_TYPES (biosimulators_test_suite.test_case.sedml.SimulatorSupportsRepeatedTasksWithNestedRepeatedTasks attribute)</a>
<ul>
<li><a href="source/biosimulators_test_suite.test_case.html#biosimulators_test_suite.test_case.sedml.SimulatorSupportsRepeatedTasksWithSubTasksOfMixedTypes.MIXED_SUB_TASK_TYPES">(biosimulators_test_suite.test_case.sedml.SimulatorSupportsRepeatedTasksWithSubTasksOfMixedTypes attribute)</a>
</li>
</ul></li>