R 4.5.0

Author: jwijffels

CHANGELOG

@@ -4,19 +4,20 @@
 
 - blackbar-vscode
    - Upgrade to Ubuntu 24.04
+   - Upgrade to R 4.5.0   
    - Python packages
       - added prefect==3.4.22 and prefect-dask==0.3.6
       - upgrade to pycaprio==0.3.0 and dkpro-cassis==0.10.1
 - blackbar-rstudio
    - Upgrade to Ubuntu 24.04
-   - Upgrade to R 4.4.3
+   - Upgrade to R 4.5.0
    - Python packages
       - added prefect==3.4.22 and prefect-dask==0.3.6
       - upgrade to pycaprio==0.3.0 and dkpro-cassis==0.10.1
 - blackbar-shinyproxy
    - blackbar-shinyproxy-3.2.0 added
    - Based on Ubuntu 24.04 and Java 21 adding "-XX:MaxRAMPercentage=50.0", "-XX:MinRAMPercentage=20.0", "-XX:+ExitOnOutOfMemoryError" to java options at startup
-- blackbar-base
+- blackbar-base and blackbar-base-apps
    - Upgrade to prefect 3.4.22
    - Based on Debian 13 (trixie)
 

README.md

@@ -50,10 +50,10 @@ docker pull ghcr.io/bnosac/blackbar-shinyproxy-3.0.2:latest
 - blackbar development environments
 
    - **blackbar-rstudio**: 
-       - Docker image containing RStudio, R 4.4.3, Python 3.10, Python packages relevant for blackbar, Java 21, based on Ubuntu 24.04 (release >= 0.3.0)
+       - Docker image containing RStudio, R 4.5.0, Python 3.10, Python packages relevant for blackbar, Java 21, based on Ubuntu 24.04 (release >= 0.3.0)
        - Docker image containing RStudio, R 4.2.1, Python 3.10, Python packages relevant for blackbar, Java 21, based on Ubuntu 20.04 (release <= 0.2.2)
    - **blackbar-vscode**: 
-       - Docker image containing Visual Studio code-server 4.99.3, R 4.4.3, Python 3.10, Python packages relevant for blackbar, Java 21, based on Ubuntu 24.04 (release >= 0.3.0)
+       - Docker image containing Visual Studio code-server 4.99.3, R 4.5.0, Python 3.10, Python packages relevant for blackbar, Java 21, based on Ubuntu 24.04 (release >= 0.3.0)
        - Docker image containing Visual Studio code-server 4.99.3, R 4.2.1, Python 3.10, Python packages relevant for blackbar, Java 21, based on Ubuntu 20.04 (release <= 0.2.2)
 
 ```

apps/Dockerfile

@@ -9,11 +9,7 @@ LABEL org.opencontainers.image.licenses="Apache-2.0"
 ##
 RUN apt update -qq \
     && apt-get install -y lsb-release \
-    && apt-get install -y --reinstall software-properties-common dirmngr \
-    && gpg --keyserver keyserver.ubuntu.com --recv-key '95C0FAF38DB3CCAD0C080A7BDC78B2DDEABC47B7' \
-    && gpg --armor --export '95C0FAF38DB3CCAD0C080A7BDC78B2DDEABC47B7' | tee -a /etc/apt/trusted.gpg.d/cran_debian_key.asc \
-    && add-apt-repository -y "deb https://cloud.r-project.org/bin/linux/debian $(lsb_release -cs)-cran40/" \
-    && apt-get update \
+    && apt-get install -y --reinstall dirmngr \
     && apt-get install -y --no-install-recommends wget libcurl4-openssl-dev libssl-dev curl bash git pkg-config \
     && apt-get install -y --no-install-recommends r-base \
     && apt-get install -y --no-install-recommends r-cran-rcpp r-cran-data.table r-cran-jsonlite r-cran-zip \
@@ -33,8 +29,8 @@ RUN echo "\noptions(shiny.port = 3838, shiny.host = '0.0.0.0')" >> /etc/R/Rprofi
 ##
 USER root
 RUN echo $(python -c "import site; print('\n'.join(site.getsitepackages()))")
-RUN python -m pip install --no-cache-dir --target=$(python -c "import site; print('\n'.join(site.getsitepackages()))") dkpro-cassis prefect-dask prefect websockets htmltools gunicorn --upgrade
-#RUN python -m pip install --no-cache-dir --target=$(python -c "import site; print('\n'.join(site.getsitepackages()))") websockets htmltools gunicorn --upgrade
+#RUN python -m pip install --no-cache-dir --target=$(python -c "import site; print('\n'.join(site.getsitepackages()))") dkpro-cassis prefect-dask prefect websockets htmltools gunicorn --upgrade
+RUN python -m pip install --no-cache-dir --target=$(python -c "import site; print('\n'.join(site.getsitepackages()))") websockets htmltools gunicorn --upgrade
 
 ##
 ## User blackbar

development/rstudio/Dockerfile

@@ -1,5 +1,5 @@
 ## Ubuntu 24.04 with RStudio
-FROM ghcr.io/rocker-org/rstudio:4.4.3
+FROM ghcr.io/rocker-org/rstudio:4.5.0
 
 ##
 ## System requirements

development/vscode/Dockerfile

@@ -1,12 +1,12 @@
 ## Ubuntu 24.04 VS Code Server
-FROM ghcr.io/rocker-org/rstudio:4.4.3 AS rstudio
+FROM ghcr.io/rocker-org/rstudio:4.5.0 AS rstudio
 FROM codercom/code-server:4.99.3-noble
 
 USER root
 
 ENV CRAN="https://p3m.dev/cran/__linux__/noble/latest"
 ENV LANG=en_US.UTF-8
-ENV R_VERSION="4.4.3"
+ENV R_VERSION="4.5.0"
 ENV R_HOME="/usr/local/lib/R"
 ENV TZ="Etc/UTC"