Merge branch 'master' into logscale-minor-refactor

Author: johnomotani

.github/workflows/master.yml

@@ -20,9 +20,41 @@ jobs:
     if: always()
     strategy:
       matrix:
-        python-version: [3.7, 3.8]
+        python-version: [3.7, 3.8, 3.9]
         pip-packages:
           - "setuptools pip pytest pytest-cov coverage codecov boutdata xarray numpy>=1.16.0"
+      fail-fast: false
+
+    steps:
+    - uses: actions/checkout@v2
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v1
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Install dependencies
+      run: |
+        sudo apt-get install libhdf5-dev libnetcdf-dev
+        python -m pip install --upgrade pip
+        pip install --upgrade ${{ matrix.pip-packages }}
+        pip install -e .
+    - name: Test with pytest
+      run: |
+        pip install pytest
+        pytest -v --long --cov
+    - name: Upload coverage to Codecov
+      uses: codecov/codecov-action@v1
+      with:
+        fail_ci_if_error: true
+
+
+  pytest-min-versions:
+
+    runs-on: ubuntu-latest
+    if: always()
+    strategy:
+      matrix:
+        python-version: [3.7, 3.8]
+        pip-packages:
           - "setuptools pip pytest pytest-cov coverage codecov boutdata xarray==0.17.0 dask==2.10.0 numpy==1.16.0 natsort==5.5.0 matplotlib==3.1.1 animatplot==0.4.2 netcdf4==1.4.2 Pillow==6.1.0 fsspec" # test with oldest supported version of packages. Note, using numpy==1.16.0 as a workaround for some weird fails on Travis, in principle we should work with numpy>=1.13.3. We should not need to install fsspec explicitly, but at the moment are getting import errors in the tests due to fsspec not being present - should remove in future, probably when dask version is increased.
       fail-fast: false
 

.github/workflows/pythonpackage.yml

@@ -16,9 +16,41 @@ jobs:
     if: always()
     strategy:
       matrix:
-        python-version: [3.7, 3.8]
+        python-version: [3.7, 3.8, 3.9]
         pip-packages:
           - "setuptools pip pytest pytest-cov coverage codecov boutdata xarray numpy>=1.16.0"
+      fail-fast: false
+
+    steps:
+    - uses: actions/checkout@v2
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v1
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Install dependencies
+      run: |
+        sudo apt-get install libhdf5-dev libnetcdf-dev
+        python -m pip install --upgrade pip
+        pip install --upgrade ${{ matrix.pip-packages }}
+        pip install -e .
+    - name: Test with pytest
+      run: |
+        pip install pytest
+        pytest -v --long --cov
+    - name: Upload coverage to Codecov
+      uses: codecov/codecov-action@v1
+      with:
+        fail_ci_if_error: true
+
+
+  pytest-min-versions:
+
+    runs-on: ubuntu-latest
+    if: always()
+    strategy:
+      matrix:
+        python-version: [3.7, 3.8]
+        pip-packages:
           - "setuptools pip pytest pytest-cov coverage codecov boutdata xarray==0.17.0 dask==2.10.0 numpy==1.16.0 natsort==5.5.0 matplotlib==3.1.1 animatplot==0.4.2 netcdf4==1.4.2 Pillow==6.1.0 fsspec" # test with oldest supported version of packages. Note, using numpy==1.16.0 as a workaround for some weird fails on Travis, in principle we should work with numpy>=1.13.3. We should not need to install fsspec explicitly, but at the moment are getting import errors in the tests due to fsspec not being present - should remove in future, probably when dask version is increased.
       fail-fast: false
 

.github/workflows/pythonpublish.yml

@@ -14,9 +14,41 @@ jobs:
     if: always()
     strategy:
       matrix:
-        python-version: [3.7, 3.8]
+        python-version: [3.7, 3.8, 3.9]
         pip-packages:
           - "setuptools pip pytest pytest-cov coverage codecov boutdata xarray numpy>=1.16.0"
+      fail-fast: true
+
+    steps:
+    - uses: actions/checkout@v2
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v1
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Install dependencies
+      run: |
+        sudo apt-get install libhdf5-dev libnetcdf-dev
+        python -m pip install --upgrade pip
+        pip install --upgrade ${{ matrix.pip-packages }}
+        pip install -e .
+    - name: Test with pytest
+      run: |
+        pip install pytest
+        pytest -v --long --cov
+    - name: Upload coverage to Codecov
+      uses: codecov/codecov-action@v1
+      with:
+        fail_ci_if_error: true
+
+
+  pytest-min-versions:
+
+    runs-on: ubuntu-latest
+    if: always()
+    strategy:
+      matrix:
+        python-version: [3.7, 3.8]
+        pip-packages:
           - "setuptools pip pytest pytest-cov coverage codecov boutdata xarray==0.17.0 dask==2.10.0 numpy==1.16.0 natsort==5.5.0 matplotlib==3.1.1 animatplot==0.4.2 netcdf4==1.4.2 Pillow==6.1.0 fsspec" # test with oldest supported version of packages. Note, using numpy==1.16.0 as a workaround for some weird fails on Travis, in principle we should work with numpy>=1.13.3. We should not need to install fsspec explicitly, but at the moment are getting import errors in the tests due to fsspec not being present - should remove in future, probably when dask version is increased.
       fail-fast: true