changing globals to be saved by day in subject folder, removed fparam separate saving

Author: Anne Mennen

webInterface/rtAtten/RtAttenWeb.py

@@ -334,12 +334,6 @@ def writeRegConfigFile(regGlobals, scriptPath):
                         val = os.path.normpath(CommonOutputDir + val)
                 fp.write(key + '=' + str(val) + '\n')
             fp.write('code_path=' + registrationDir)
-        # Save f param value to a file
-        fparam = regGlobals.get('fParam', None)
-        if fparam is not None:
-            fparamFilename = os.path.join(scriptPath, 'fparam.txt')
-            with open(fparamFilename, 'w') as fp:
-                fp.write('fparam: ' + str(fparam))
 
     @staticmethod
     def runSession():

webInterface/rtAtten/registration/reg_epi_day2.sh

@@ -54,6 +54,6 @@ fi
 
 echo="copying this version for safe keeping!"
 cp $code_path/reg_epi_day2.sh $data_path/subject$subjectNum/usedscripts/reg_epi_day2_$dayNum'.'sh
-
+cp $code_path/globals.sh $data_path/subject$subjectNum/usedscripts/globals_day$dayNum.sh
 
 cd $data_path

webInterface/rtAtten/registration/skullstrip_t1.sh

@@ -45,5 +45,5 @@ fi
 echo "copying this version of file into subject folder for safe keeping!"
 mkdir -pv $data_path/subject$subjectNum/usedscripts/
 cp $code_path/skullstrip_t1.sh $data_path/subject$subjectNum/usedscripts/skullstrip_T1.sh
-cp $code_path/globals.sh $data_path/subject$subjectNum/usedscripts/
+cp $code_path/globals.sh $data_path/subject$subjectNum/usedscripts/globals_day$dayNum.sh
 echo "done!"