broadinstitute
diff --git a/‎bbbc022/Chemical-and-phenotypic-spaces.ipynb‎
Lines changed: 2 additions & 6 deletions b/‎bbbc022/Chemical-and-phenotypic-spaces.ipynb‎
Lines changed: 2 additions & 6 deletions
diff --git a/‎bbbc022/data/well_level_aux_combined.csv.gz‎
-42.5 MB b/‎bbbc022/data/well_level_aux_combined.csv.gz‎
-42.5 MB
@@ -10,8 +10,7 @@
     "import matplotlib.pyplot as plt\n",
     "import pandas as pd\n",
     "import seaborn as sb\n",
-    "import umap\n",
-    "from sklearn.decomposition import PCA"
+    "import umap"
    ]
   },
   {
@@ -20,11 +19,8 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "aux = pd.read_csv('data/well_level_aux_combined.csv.gz')\n",
     "main = pd.read_csv('data/treatment_level_aux_combined.csv.gz')\n",
-    "\n",
-    "columns = [str(i) for i in range(672)]\n",
-    "well_data = aux[columns].to_numpy()"
+    "columns = [str(i) for i in range(672)]"
    ]
   },
   {
Original file line number	Diff line number	Diff line change
`@@ -10,8 +10,7 @@`
`10`	`10`	`"import matplotlib.pyplot as plt\n",`
`11`	`11`	`"import pandas as pd\n",`
`12`	`12`	`"import seaborn as sb\n",`
`13`		`- "import umap\n",`
`14`		`- "from sklearn.decomposition import PCA"`
	`13`	`+ "import umap"`
`15`	`14`	`]`
`16`	`15`	`},`
`17`	`16`	`{`
`@@ -20,11 +19,8 @@`
`20`	`19`	`"metadata": {},`
`21`	`20`	`"outputs": [],`
`22`	`21`	`"source": [`
`23`		`- "aux = pd.read_csv('data/well_level_aux_combined.csv.gz')\n",`
`24`	`22`	`"main = pd.read_csv('data/treatment_level_aux_combined.csv.gz')\n",`
`25`		`- "\n",`
`26`		`- "columns = [str(i) for i in range(672)]\n",`
`27`		`- "well_data = aux[columns].to_numpy()"`
	`23`	`+ "columns = [str(i) for i in range(672)]"`
`28`	`24`	`]`
`29`	`25`	`},`
`30`	`26`	`{`