test -e /tmp/scratch/ || echo 'input file: /tmp/scratch/ does not exist' && exit 1

[wangjshan]

#!/bin/bash

{
set -e
echo '*** LOCALIZING INPUTS ***'
if [ ! -d /tmp/scratch ]; then mkdir /tmp/scratch && chmod 777 /tmp/scratch; fi
cd /tmp/scratch
/usr/local/aws-cli/v2/current/bin/aws s3 cp --no-progress s3://eronbio-tmp/cromwell-execution/celescope_citeseq/18888382-9100-41cd-a60d-ed2cd15
94082/call-samplebarcode/.data.json /tmp/scratch/eronbio-tmp/cromwell-execution/celescope_citeseq/18888382-9100-41cd-a60d-ed2cd1594082/call-sam
plebarcode/.data.json
/usr/local/aws-cli/v2/current/bin/aws s3 cp --no-progress s3://eronbio-tmp/cromwell-execution/celescope_citeseq/18888382-9100-41cd-a60d-ed2cd15
94082/call-samplebarcode/01.barcode/test_2.fq /tmp/scratch/leronbio-tmp/cromwell-execution/celescope_citeseq/18888382-9100-41cd-a60d-ed2cd159408
2/call-samplebarcode/01.barcode/test_2.fq
/usr/local/aws-cli/v2/current/bin/aws s3 cp --no-progress s3://leronbio/2025/test_pipeline/citeseq_v2/test.fasta /tmp/scratch/leronbio/2025/test_pipeline/citeseq_v2/test.fasta
/usr/local/aws-cli/v2/current/bin/aws s3 cp --no-progress s3://leronbio/cromwell-execution/celescope_citeseq/18888382-9100-41cd-a60d-ed2cd1594082/call-mapping_tag/script /tmp/scratch/leronbio/cromwell-execution/celescope_citeseq/18888382-9100-41cd-a60d-ed2cd1594082/call-mapping_tag/script
test -e /tmp/scratch/ || echo 'input file: /tmp/scratch/ does not exist' && exit 1