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Description
Below, I've outlined a series of features that can be enable the pipeline to be more maintainable, robust and automated - and ultimately, hopefully (eventually) save its developers countless hours of time spent on more 'administrative' tasks.
- Github Action that updates featured workspace workflows, notebooks and data upon a new release tag. For template code, this workspace has automated syncing of notebook, and is linked to the following Github repository that uses the following Github Action.
- Github Action that extracts content from parameter_meta fields in workflows to automatically update parameter definitions in the website documentation.
- Testing infrastructure for the various scripts and tools within GATK-SV (especially those part of svtk).
- VPC service controls for GATK-SV's artifact registry in order to limit egress costs if the publicly-available dockers are pulled from other regions - the process to do this is described in this article.
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enhancementNew feature or requestNew feature or request