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Merge master, fix unrelated VDS-making breakage [VS-1777] #5959

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Merge master, fix unrelated VDS-making breakage [VS-1777]

Merge master, fix unrelated VDS-making breakage [VS-1777] #5959

Triggered via pull request December 5, 2025 22:10
@mcovarrmcovarr
synchronize #9302
vs_1777_build_failure
Status Success
Total duration 45m 34s
Artifacts 8

gatk-tests.yml

on: pull_request
check if the environment has privileges
4s
check if the environment has privileges
build and push gatk docker to artifacts
14m 17s
build and push gatk docker to artifacts
Validate script WDLs using womtools
2m 59s
Validate script WDLs using womtools
Validate generated WDLs using womtools
14m 28s
Validate generated WDLs using womtools
Matrix: wdlTests
Matrix: test
Matrix: testOnDocker
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9 errors
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
Process completed with exit code 1.
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
Process completed with exit code 1.
unit build and test Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
cloud build and test Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
integration build and test Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
unit test on docker Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
conda test on docker Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
variantcalling test on docker Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
integration test on docker Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth

Artifacts

Produced during runtime
Name Size Digest
gatkDockerImage
2.29 GB
sha256:0c9b53240d86c53ebaf6d2687079c4f85f278262e1a39a827fc7aa9262144174
test-results-17.0.6+10-cloud
87 KB
sha256:5b9516ab887bbb984f65e33e18d5ee8bcc24db9b9b077866e5094cbe0a3b5de6
test-results-17.0.6+10-integration
579 KB
sha256:54cc24842b99f577a67697ad7718c6c2ff3936e049578f85946f4e446ca08ce1
test-results-17.0.6+10-unit
5.15 MB
sha256:5a946a6fb9fec9ec80b59b7e1204c2920aeeca54d58187d2b9030140b037d684
test-results-docker-17.0.6+10-conda
59.5 KB
sha256:0a4e14a3753bc296d410b16b89c09882f18a944ad68d5dba2f39a37f1dfc9559
test-results-docker-17.0.6+10-integration
582 KB
sha256:4c67b74d8dce8bd6daafe362a29acbeb0b7f40ce504cfee5324356276de93e3f
test-results-docker-17.0.6+10-unit
5 MB
sha256:7dd8244e5778221b254104a3ad86f741b00f8cc660707dcf97940deec5d66430
test-results-docker-17.0.6+10-variantcalling
31.7 KB
sha256:9086eec62a225afe37be2f7d407ecaa92121bd0f78416dd73d514129b8d0be65