Skip to content
Build and Test GATK 4

Merge master, fix unrelated VDS-making breakage [VS-1777] #5962

Sign in to view logs

Merge master, fix unrelated VDS-making breakage [VS-1777]

Merge master, fix unrelated VDS-making breakage [VS-1777] #5962

Triggered via pull request December 5, 2025 23:18
@mcovarrmcovarr
synchronize #9302
vs_1777_build_failure
Status Success
Total duration 46m 57s
Artifacts 8

gatk-tests.yml

on: pull_request
check if the environment has privileges
4s
check if the environment has privileges
build and push gatk docker to artifacts
13m 14s
build and push gatk docker to artifacts
Validate script WDLs using womtools
2m 35s
Validate script WDLs using womtools
Validate generated WDLs using womtools
14m 33s
Validate generated WDLs using womtools
Matrix: wdlTests
Matrix: test
Matrix: testOnDocker
Fit to window
Zoom out
Zoom in

Annotations

11 errors
WDL test RUN_CNV_SOMATIC_WDL on cromwell
Process completed with exit code 1.
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
Process completed with exit code 1.
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
Process completed with exit code 1.
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
Process completed with exit code 1.
cloud build and test Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
unit build and test Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
integration build and test Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
unit test on docker Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
conda test on docker Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
variantcalling test on docker Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
integration test on docker Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth

Artifacts

Produced during runtime
Name Size Digest
gatkDockerImage
2.29 GB
sha256:bbe2a61f480323bab563c4a2a5c46a053d253a57eae83f3c7aaf5caaa8682250
test-results-17.0.6+10-cloud
86.8 KB
sha256:24324cedce9e12f22e80f627f8345315d3b9d8adc205b366067ff982975c6e36
test-results-17.0.6+10-integration
579 KB
sha256:2eff85460e6c38a0bd98b7813842ddae2716a0201ad2e3471db3055d7aa1c240
test-results-17.0.6+10-unit
5.15 MB
sha256:649232dad33ccc417ca644409a7534bb505db8d2a79b2b07f2adda83403ab539
test-results-docker-17.0.6+10-conda
59.6 KB
sha256:4352db9a223cd3f5b2c477432710a8cd52d284e978e08cc744b3bfcce4abe1c0
test-results-docker-17.0.6+10-integration
582 KB
sha256:c33fdba5d646f00431c85e13eab4a4e1e68d6eaaf8b22d69a8657e6a7e8bc633
test-results-docker-17.0.6+10-unit
5.01 MB
sha256:20e109a77b42cb99b316feceea61c041783432ba52dbf3e671a5d7b3e159dbb1
test-results-docker-17.0.6+10-variantcalling
31.9 KB
sha256:489541c886012b6173ce73e034def7b1f16077b52c50f0b3d4ed5acc6ea32d0a