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Merge master, fix unrelated VDS-making breakage [VS-1777] #5974

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Merge master, fix unrelated VDS-making breakage [VS-1777]

Merge master, fix unrelated VDS-making breakage [VS-1777] #5974

Triggered via pull request December 8, 2025 19:56
@mcovarrmcovarr
synchronize #9302
vs_1777_build_failure
Status Success
Total duration 46m 40s
Artifacts 8

gatk-tests.yml

on: pull_request
check if the environment has privileges
2s
check if the environment has privileges
build and push gatk docker to artifacts
13m 39s
build and push gatk docker to artifacts
Validate script WDLs using womtools
2m 59s
Validate script WDLs using womtools
Validate generated WDLs using womtools
14m 45s
Validate generated WDLs using womtools
Matrix: wdlTests
Matrix: test
Matrix: testOnDocker
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9 errors
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
Process completed with exit code 1.
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
Process completed with exit code 1.
cloud build and test Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
unit build and test Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
integration build and test Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
unit test on docker Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
variantcalling test on docker Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
conda test on docker Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
integration test on docker Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth

Artifacts

Produced during runtime
Name Size Digest
gatkDockerImage
2.29 GB
sha256:56c91b36d70f2bc53daf6616b0f2284697846b7d6c4cba12c7267a63ffb1a5c0
test-results-17.0.6+10-cloud
86.9 KB
sha256:39cd365ab669328fca0f6c83375447ab7e4f715aaccc79653b341a4428b6c517
test-results-17.0.6+10-integration
579 KB
sha256:7df4022e0f4b39cf1a39c8b23e6008e5fa09840137d950b0b573ec1e66fec654
test-results-17.0.6+10-unit
5.15 MB
sha256:a6e16d36c5f899b75b669155dbacb18ee789372d1e71da0dc04d30f0834f6dc8
test-results-docker-17.0.6+10-conda
59.5 KB
sha256:5c22291f342d2200c7c993e8805a46e9c7fd4112477c8bc3d54469c9efbba4e3
test-results-docker-17.0.6+10-integration
581 KB
sha256:c9fd5fa28b51b222ddc6efa2c579f829041f7dd7ce6ebf4c53e0b9e3c33ed7d9
test-results-docker-17.0.6+10-unit
5.01 MB
sha256:dba4383b9dac761bd0c05cb152644e8932a22deee35a1e87299570b88bbd28a3
test-results-docker-17.0.6+10-variantcalling
31.8 KB
sha256:f0c5c5ee37e7fed00d6a91b0deacd0ecaefd00674afb1fa62874f686610f9e1d