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Merge master, fix unrelated VDS-making breakage [VS-1777] #5976

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Merge master, fix unrelated VDS-making breakage [VS-1777]

Merge master, fix unrelated VDS-making breakage [VS-1777] #5976

Triggered via pull request December 9, 2025 00:40
@mcovarrmcovarr
synchronize #9302
vs_1777_build_failure
Status Success
Total duration 46m 10s
Artifacts 8

gatk-tests.yml

on: pull_request
check if the environment has privileges
4s
check if the environment has privileges
build and push gatk docker to artifacts
13m 37s
build and push gatk docker to artifacts
Validate script WDLs using womtools
2m 50s
Validate script WDLs using womtools
Validate generated WDLs using womtools
14m 24s
Validate generated WDLs using womtools
Matrix: wdlTests
Matrix: test
Matrix: testOnDocker
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10 errors
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
Process completed with exit code 1.
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
Process completed with exit code 1.
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
Process completed with exit code 1.
cloud build and test Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
unit build and test Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
integration build and test Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
unit test on docker Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
conda test on docker Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
variantcalling test on docker Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
integration test on docker Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth

Artifacts

Produced during runtime
Name Size Digest
gatkDockerImage
2.29 GB
sha256:0bc33bbe4aa44fd372cc39e0b87357b718955ab781d1756647ec19f5371f1a0f
test-results-17.0.6+10-cloud
87 KB
sha256:db74d5666faa390bd86230e3d3c476fe47f7a4f3944e0341b9ced257f4435cf1
test-results-17.0.6+10-integration
579 KB
sha256:24319e7321a4e73f05fa82aa3bd8833f1e7b48e4dac573bcf81a51d2f97b4afb
test-results-17.0.6+10-unit
5.15 MB
sha256:6208c18070980d9e5b90c1366246a2fcd06d56bb1c1a8810fc84a59b8a8908e2
test-results-docker-17.0.6+10-conda
59.6 KB
sha256:de998015648d748dfa0b61562b8888709bbf5a8816cbc27d3d3029b7c1349d1b
test-results-docker-17.0.6+10-integration
581 KB
sha256:3aff418e64a403d38b1c30037efc4aae501c2f0b2017f81dca7052be60dc0c4e
test-results-docker-17.0.6+10-unit
5.01 MB
sha256:de363deacc96427eb3396f6339bb219959fa73b9fe30ed987a5e674548eb1795
test-results-docker-17.0.6+10-variantcalling
31.8 KB
sha256:f08d39db146755c02ea69d56814f2eaae7ba9cc47e2e098c269d74f59419567d