Changed flow allele filtering in Mutect2 to work separately on the tumor and the normal samples #5991

Job	Run time
Validate generated WDLs using womtools	14m 31s
check if the environment has privileges	2s
Validate script WDLs using womtools	1m 12s
build and push gatk docker to artifacts	13m 6s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	10m 26s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	12m 8s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	10m 49s
WDL test RUN_M2_WDL on cromwell	17m 26s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	11m 0s
integration build and test Java 17.0.6+10	30m 1s
cloud build and test Java 17.0.6+10	4m 22s
unit build and test Java 17.0.6+10	17m 54s
conda test on docker Java 17.0.6+10	24m 9s
variantcalling test on docker Java 17.0.6+10	26m 40s
integration test on docker Java 17.0.6+10	32m 0s
unit test on docker Java 17.0.6+10	20m 5s
	4h 5m 51s

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