Home

Welcome to the gatk wiki!

This wiki will host the developer docs relevant to the GATK framework and public tools starting with version 4.

Project overview and quickstart guide

Please see the README for the most up-to-date information.

End-user documentation

For end-user documentation, please see the GATK 4 documentation forum.

Licensing

This repository contains the code corresponding to the core GATK 4+ development framework, including the new GATK engine and many utilities, which third-party developers can use to develop their own GATK-based analysis tools. We encourage developers to use this new framework for development and we welcome feedback regarding features and development support.

All the code in this repository is open-source under a BSD license. The full text of the license can be viewed here.