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broadinstitute / gatk Public

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Writing GATK Tools that use Python

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Chris Norman edited this page Jan 11, 2018 · 2 revisions

Under construction.

Toggle table of contents Pages 26

Home
Build GATK with a locally built htsjdk or Hadoop BAM
Checks and tests guidelines
Creating a Cloudera Cluster in the Cloud
Debugging Spark
Deprecating GATK Features
Efficiently Copying Files into HDFS
Expand outdated Github Comments
Forum How to update gatk tools doc to default to the latest version
GATK Metrics Collectors
GATK4 Documentation Generation
GATK4 Documentation Guidelines
Guidelines for updating GATK javadoc
hdfs paths on the broad cluster
How to Get a File off the Broad Server
How to Prepare a GATK tool for WDL Auto Generation
How to release GATK4
How to set up and use cloud dev environment
How to Share a Large File with a Forum User
How to update the gatk base docker
Running Intel PAT on Dataproc
Setting a gcs bucket to be public
Spark Evaluation Results
Switching to Java 17
Troubleshooting Spark
Writing GATK Tools that use Python

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