diff --git a/seqr/fixtures/variant_searches.json b/seqr/fixtures/variant_searches.json index 11b05577df..b2e2c04c05 100644 --- a/seqr/fixtures/variant_searches.json +++ b/seqr/fixtures/variant_searches.json @@ -43,7 +43,6 @@ ], "missense": [ "stop_lost", - "initiator_codon_variant", "start_lost", "protein_altering_variant", "missense_variant" @@ -143,7 +142,6 @@ ], "missense": [ "stop_lost", - "initiator_codon_variant", "start_lost", "protein_altering_variant", "missense_variant" @@ -198,7 +196,6 @@ ], "missense": [ "stop_lost", - "initiator_codon_variant", "start_lost", "protein_altering_variant", "missense_variant" @@ -263,13 +260,15 @@ "annotations": { "other": [ "transcript_ablation", - "transcript_amplification", "5_prime_UTR_variant", "3_prime_UTR_variant", - "non_coding_exon_variant", + ], + "motif_feature": [ "TFBS_ablation", "TFBS_amplification", - "TF_binding_site_variant", + "TF_binding_site_variant" + ], + "regulatory_feature": [ "regulatory_region_variant", "regulatory_region_ablation", "regulatory_region_amplification" @@ -280,7 +279,6 @@ ], "missense": [ "stop_lost", - "initiator_codon_variant", "start_lost", "protein_altering_variant", "missense_variant" @@ -311,11 +309,9 @@ "LOF", "COPY_GAIN", "DUP_PARTIAL", - "MSV_EXON_OVR", "INTRONIC", "INV_SPAN", "UTR", - "INTERGENIC", "INTRAGENIC_EXON_DUP", "PARTIAL_EXON_DUP", "BREAKEND_EXONIC", @@ -388,16 +384,13 @@ } }, "annotations": { - "other": [ - "non_coding_exon_variant" - ], + "other": [], "in_frame": [ "inframe_insertion", "inframe_deletion" ], "missense": [ "stop_lost", - "initiator_codon_variant", "start_lost", "protein_altering_variant", "missense_variant" @@ -421,7 +414,6 @@ ], "structural_consequence": [ "LOF", - "MSV_EXON_OVR", "INTRAGENIC_EXON_DUP", "INV_SPAN", "BREAKEND_EXONIC", @@ -454,16 +446,19 @@ "annotations_secondary": { "other": [ "transcript_ablation", - "transcript_amplification", "5_prime_UTR_variant", "3_prime_UTR_variant", + "non_coding_transcript_exon_variant__canonical" + ], + "motif_feature": [ "TFBS_ablation", "TFBS_amplification", - "TF_binding_site_variant", + "TF_binding_site_variant" + ], + "regulatory_feature": [ "regulatory_region_variant", "regulatory_region_ablation", - "regulatory_region_amplification", - "non_coding_transcript_exon_variant__canonical" + "regulatory_region_amplification" ], "in_frame": [ "inframe_insertion", @@ -471,7 +466,6 @@ ], "missense": [ "stop_lost", - "initiator_codon_variant", "start_lost", "protein_altering_variant", "missense_variant"