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X linked recessive filter returns variants in autosomes #5069

@hanars

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@hanars

Discussed in #5068

Originally posted by anjalijain22 October 6, 2025
Hello, hope you're doing well! Thank you very much for the Clickhouse update, we appreciate your efforts to make seqr an amazing tool!

I was playing around with the search features and found that selecting the X linked recessive filter under inheritance is returning variants in autosomes as well as chrX. I don't recall this happening with elasticsearch or hail backends. Is this expected behaviour?

Screenshot 2025-10-06 at 9 40 46 AM

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