diff --git a/.github/workflows/dev-vlm-release.yaml b/.github/workflows/dev-vlm-release.yaml new file mode 100644 index 0000000000..a37c525434 --- /dev/null +++ b/.github/workflows/dev-vlm-release.yaml @@ -0,0 +1,64 @@ +name: vlm dev release +on: + workflow_run: + workflows: ["VLM Unit Tests"] + types: + - completed + branches: + - dev + +permissions: + id-token: write + +jobs: + docker: + runs-on: ubuntu-latest + if: ${{ github.event.workflow_run.conclusion == 'success' }} + steps: + - name: checkout + uses: actions/checkout@v3 + with: + ref: ${{ github.event.workflow_run.head_branch }} + + - name: authenticate to google cloud + id: "auth" + uses: google-github-actions/auth@v0 + with: + workload_identity_provider: "${{ secrets.WORKLOAD_IDENTITY_PROVIDER }}" + service_account: "${{ secrets.RUN_SA_EMAIL }}" + + - name: "setup gcloud sdk" + uses: google-github-actions/setup-gcloud@v0 + + - name: Build and push images + run: |- + gcloud builds submit --quiet --substitutions="COMMIT_SHA=${{ github.event.workflow_run.head_sha }},_CUSTOM_BRANCH_TAG=gcloud-dev" --config .cloudbuild/seqr-vlm-docker.cloudbuild.yaml --gcs-log-dir=gs://seqr-github-actions-logs/logs . + + helm_update: + runs-on: ubuntu-latest + needs: docker + steps: + - name: Retrieve tgg-helm repo for broad seqr chart + uses: actions/checkout@v3 + with: + repository: broadinstitute/tgg-helm + token: ${{ secrets.SEQR_VERSION_UPDATE_TOKEN }} + ref: main + persist-credentials: false + fetch-depth: 0 + + - name: update image tag in the dev broad seqr chart + uses: mikefarah/yq@v4.22.1 + with: + cmd: > + yq -i '.seqr-platform.vlm.image.tag = "${{ github.event.workflow_run.head_sha }}"' charts/dev-broad-seqr/values.yaml + + - name: Commit and Push changes + uses: Andro999b/push@v1.3 + with: + repository: broadinstitute/tgg-helm + branch: main + github_token: ${{ secrets.SEQR_VERSION_UPDATE_TOKEN }} + author_email: ${{ github.actor }}@users.noreply.github.com + author_name: tgg-automation + message: "Update VLM dev release docker tag to ${{ github.event.workflow_run.head_sha }}" diff --git a/.github/workflows/unit-tests.yml b/.github/workflows/unit-tests.yml index 3c64d97667..b249781327 100644 --- a/.github/workflows/unit-tests.yml +++ b/.github/workflows/unit-tests.yml @@ -10,13 +10,15 @@ on: paths-ignore: - 'hail_search/**' - 'vlm/**' - - '.github/workflows/hail-search-unit-tests.yaml' + - '.github/workflows/*hail-search*.yaml' + - '.github/workflows/*vlm*.yaml' pull_request: types: [opened, synchronize, reopened] paths-ignore: - 'hail_search/**' - 'vlm/**' - - '.github/workflows/hail-search-unit-tests.yaml' + - '.github/workflows/*hail-search*.yaml' + - '.github/workflows/*vlm*.yaml' jobs: python: diff --git a/.github/workflows/vlm-unit-tests.yaml b/.github/workflows/vlm-unit-tests.yaml index f4ea5b92d4..8ce2c2d946 100644 --- a/.github/workflows/vlm-unit-tests.yaml +++ b/.github/workflows/vlm-unit-tests.yaml @@ -9,10 +9,12 @@ on: - dev paths: - 'vlm/**' + - '.github/workflows/*vlm*.yaml' pull_request: types: [opened, synchronize, reopened] paths: - 'vlm/**' + - '.github/workflows/*vlm*.yaml' jobs: vlm: