Update Julia version and dependencies in Manifest.toml

Author: camilogarciabotero

docs/Manifest.toml

@@ -1,6 +1,6 @@
 # This file is machine-generated - editing it directly is not advised
 
-julia_version = "1.11.2"
+julia_version = "1.11.4"
 manifest_format = "2.0"
 project_hash = "a737ae23847074aa3f8c65ffa51f2732c1aeb154"
 
@@ -48,9 +48,9 @@ version = "1.0.0"
 
 [[deps.BioSequences]]
 deps = ["BioSymbols", "PrecompileTools", "Random", "Twiddle"]
-git-tree-sha1 = "9c9693d207634f745f9b965b4341b72b3a5e7d53"
+git-tree-sha1 = "b602272be9915fbf41923d9fa67f16309bdf25d6"
 uuid = "7e6ae17a-c86d-528c-b3b9-7f778a29fe59"
-version = "3.4.0"
+version = "3.4.1"
 
 [[deps.BioSymbols]]
 deps = ["PrecompileTools"]
@@ -65,9 +65,9 @@ version = "0.1.9"
 
 [[deps.CodecZlib]]
 deps = ["TranscodingStreams", "Zlib_jll"]
-git-tree-sha1 = "bce6804e5e6044c6daab27bb533d1295e4a2e759"
+git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9"
 uuid = "944b1d66-785c-5afd-91f1-9de20f533193"
-version = "0.7.6"
+version = "0.7.8"
 
 [[deps.Compat]]
 deps = ["TOML", "UUIDs"]
@@ -84,38 +84,37 @@ version = "4.16.0"
 
 [[deps.ConcurrentUtilities]]
 deps = ["Serialization", "Sockets"]
-git-tree-sha1 = "ea32b83ca4fefa1768dc84e504cc0a94fb1ab8d1"
+git-tree-sha1 = "d9d26935a0bcffc87d2613ce14c527c99fc543fd"
 uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb"
-version = "2.4.2"
+version = "2.5.0"
 
 [[deps.DataStructures]]
 deps = ["Compat", "InteractiveUtils", "OrderedCollections"]
-git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82"
+git-tree-sha1 = "4e1fe97fdaed23e9dc21d4d664bea76b65fc50a0"
 uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
-version = "0.18.20"
+version = "0.18.22"
 
 [[deps.Dates]]
 deps = ["Printf"]
 uuid = "ade2ca70-3891-5945-98fb-dc099432e06a"
 version = "1.11.0"
 
 [[deps.DocStringExtensions]]
-deps = ["LibGit2"]
-git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d"
+git-tree-sha1 = "e7b7e6f178525d17c720ab9c081e4ef04429f860"
 uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
-version = "0.9.3"
+version = "0.9.4"
 
 [[deps.Documenter]]
 deps = ["ANSIColoredPrinters", "AbstractTrees", "Base64", "CodecZlib", "Dates", "DocStringExtensions", "Downloads", "Git", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "MarkdownAST", "Pkg", "PrecompileTools", "REPL", "RegistryInstances", "SHA", "TOML", "Test", "Unicode"]
-git-tree-sha1 = "d0ea2c044963ed6f37703cead7e29f70cba13d7e"
+git-tree-sha1 = "9d733459cea04dcf1c41522ec25c31576387be8a"
 uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
-version = "1.8.0"
+version = "1.10.1"
 
 [[deps.DocumenterVitepress]]
 deps = ["ANSIColoredPrinters", "Base64", "DocStringExtensions", "Documenter", "IOCapture", "Markdown", "NodeJS_20_jll", "REPL"]
-git-tree-sha1 = "aa210b5039870d3ad181877d99fd37618e94d29c"
+git-tree-sha1 = "0ebb20995e28baa1adda28b758f31a826702b5fe"
 uuid = "4710194d-e776-4893-9690-8d956a29c365"
-version = "0.1.3"
+version = "0.1.12"
 
     [deps.DocumenterVitepress.extensions]
     DocumenterVitepressDocumenterCitationsExt = "DocumenterCitations"
@@ -136,9 +135,9 @@ version = "0.1.11"
 
 [[deps.Expat_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "e51db81749b0777b2147fbe7b783ee79045b8e99"
+git-tree-sha1 = "d55dffd9ae73ff72f1c0482454dcf2ec6c6c4a63"
 uuid = "2e619515-83b5-522b-bb60-26c02a35a201"
-version = "2.6.4+1"
+version = "2.6.5+0"
 
 [[deps.FileWatching]]
 uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"
@@ -148,7 +147,7 @@ version = "1.11.0"
 deps = ["BioMarkovChains", "BioSequences", "GenomicFeatures", "IterTools", "PrecompileTools"]
 path = ".."
 uuid = "2bc6ee46-2158-4f5a-a720-91cb2d7cee64"
-version = "0.6.1"
+version = "0.7.0"
 
 [[deps.GenomicFeatures]]
 deps = ["BioGenerics", "DataStructures", "IntervalTrees"]
@@ -164,15 +163,15 @@ version = "1.3.1"
 
 [[deps.Git_jll]]
 deps = ["Artifacts", "Expat_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Libiconv_jll", "OpenSSL_jll", "PCRE2_jll", "Zlib_jll"]
-git-tree-sha1 = "399f4a308c804b446ae4c91eeafadb2fe2c54ff9"
+git-tree-sha1 = "2f6d6f7e6d6de361865d4394b802c02fc944fc7c"
 uuid = "f8c6e375-362e-5223-8a59-34ff63f689eb"
-version = "2.47.1+0"
+version = "2.49.0+0"
 
 [[deps.HTTP]]
 deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "PrecompileTools", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"]
-git-tree-sha1 = "6c22309e9a356ac1ebc5c8a217045f9bae6f8d9a"
+git-tree-sha1 = "c67b33b085f6e2faf8bf79a61962e7339a81129c"
 uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3"
-version = "1.10.13"
+version = "1.10.15"
 
 [[deps.IOCapture]]
 deps = ["Logging", "Random"]
@@ -197,9 +196,9 @@ version = "1.10.0"
 
 [[deps.JLLWrappers]]
 deps = ["Artifacts", "Preferences"]
-git-tree-sha1 = "be3dc50a92e5a386872a493a10050136d4703f9b"
+git-tree-sha1 = "a007feb38b422fbdab534406aeca1b86823cb4d6"
 uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210"
-version = "1.6.1"
+version = "1.7.0"
 
 [[deps.JSON]]
 deps = ["Dates", "Mmap", "Parsers", "Unicode"]
@@ -243,15 +242,15 @@ version = "1.11.0"
 
 [[deps.Libiconv_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "61dfdba58e585066d8bce214c5a51eaa0539f269"
+git-tree-sha1 = "be484f5c92fad0bd8acfef35fe017900b0b73809"
 uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531"
-version = "1.17.0+1"
+version = "1.18.0+0"
 
 [[deps.LiveServer]]
 deps = ["HTTP", "LoggingExtras", "MIMEs", "Sockets", "Test"]
-git-tree-sha1 = "564a436267fb1fc768f815dad64c4386c46623f8"
+git-tree-sha1 = "9f65b8a9989e6acb6e216785dd0c748d9569fc9b"
 uuid = "16fef848-5104-11e9-1b77-fb7a48bbb589"
-version = "1.4.0"
+version = "1.5.0"
 
 [[deps.Logging]]
 uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
@@ -316,14 +315,14 @@ version = "1.4.3"
 
 [[deps.OpenSSL_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "7493f61f55a6cce7325f197443aa80d32554ba10"
+git-tree-sha1 = "a9697f1d06cc3eb3fb3ad49cc67f2cfabaac31ea"
 uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95"
-version = "3.0.15+1"
+version = "3.0.16+0"
 
 [[deps.OrderedCollections]]
-git-tree-sha1 = "12f1439c4f986bb868acda6ea33ebc78e19b95ad"
+git-tree-sha1 = "cc4054e898b852042d7b503313f7ad03de99c3dd"
 uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
-version = "1.7.0"
+version = "1.8.0"
 
 [[deps.PCRE2_jll]]
 deps = ["Artifacts", "Libdl"]
@@ -430,9 +429,9 @@ uuid = "7200193e-83a8-5a55-b20d-5d36d44a0795"
 version = "1.1.2"
 
 [[deps.URIs]]
-git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b"
+git-tree-sha1 = "cbbebadbcc76c5ca1cc4b4f3b0614b3e603b5000"
 uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4"
-version = "1.5.1"
+version = "1.5.2"
 
 [[deps.UUIDs]]
 deps = ["Random", "SHA"]