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CHANGES.md

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Changes

2.1.0

  • added an option to output some stats to a JSON file when merging single guided CRISPR read counts (read counts output of crisprReadCounts count-single).

2.0.1

  • Used the Quay.io repo for original Perl code for this code base

2.0.0

  • migrated Perl code of crisprReadCounts to Python3
  • Comparing to Perl version: sub-command "single-count" will not count non-primary alignment and vendor failed alignments
  • Comparing to Perl version: sub-command "merge-single" option --plasmid, -p is a flag, requiring NO parameter.
  • Added an option to set library file delimiter for count-single to use. By default, it assumes library file is tab delimited.
  • Sub command can optionally generate a stats file in JSON for count-single.
  • Added unit tests and some code improvements.