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input alignment filename varies between bytes and str in two places #6

@byb121

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@byb121

As the two commented lines indicate:

print "I feel there's a line somewhere in the code, if we correct it we don't need to do this. Why input path is not bytes again?"

print "how come parent_bam_file_name is not in bytes again."

This is likely caused by an unstable object type of filename attribute of pysam.AlignmentFile, but requires a closer check.

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