working map cifti surface to volume

Author: torwager

example_help_files/cifti_image_loading_and_plotting.mlx

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+
+
+% https://www.xquartz.org/
+
+% https://surfer.nmr.mgh.harvard.edu/fswiki/rel7downloads
+% https://surfer.nmr.mgh.harvard.edu/fswiki//FS7_mac
+
+
+
+% [projected, projected_seg] = CBIG_RF_projectfsaverage2Vol_single(lh_input_array, rh_input_array, interpolation, path_to_mapping, path_to_mask)
+
+cifti_struct = cifti_read('transcriptomic_gradients.dscalar.nii');
+leftdata = cifti_struct_dense_extract_surface_data(cifti_struct, 'CORTEX_LEFT', 1);
+rightdata = cifti_struct_dense_extract_surface_data(cifti_struct, 'CORTEX_RIGHT', 1);
+leftdata = leftdata(:, 1)';
+rightdata = rightdata(:, 1)';
+
+%%
+mappingfile = which('allSub_fsaverage_to_FSL_MNI152_FS4.5.0_RF_ANTs_avgMapping.prop.mat');
+
+maskfile = which('FSL_MNI152_FS4.5.0_cortex_estimate.nii.gz');
+
+[projected, projected_seg] = CBIG_RF_projectfsaverage2Vol_single(leftdata, rightdata, 'linear', mappingfile, maskfile); % , path_to_mapping, path_to_mask)