Transition to workbench format

[kevinrue]

Dear @zkamvar

When you get a chance, can you please help me transition this repository to the workbench format ?

Many thanks in advance and do let me know if I can help make the process easier in any way.

Best wishes
Kevin

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[zkamvar]

Hello, yes, I can help with that. I'll try to add it to the transition repo hopefully today.

[kevinrue]

Thanks!

[zkamvar]

I should be getting to the transition today. I was cleaning up a few things yesterday and today to make the transition a bit smoother (e.g. not modifying the library state while running the lesson: carpentries/lesson-transition@22ced01).

I am going to send a message here notifying everyone on this repository about what to expect and then set all permissions to read except for @csoneson, so that they can give permissions.

Here are some resources in the meantime:

1. What you can expect from the transition 📹: https://carpentries.github.io/workbench/beta-phase.html#beta
2. How to update your local clone 💻: https://carpentries.github.io/workbench/beta-phase.html#updating-clone
3. How to update (delete) your fork (if you have one) 📹: https://carpentries.github.io/workbench/faq.html#update-fork-from-styles

[zkamvar]

This lesson will be converted to use The Carpentries Workbench
To prevent accidental reversion of the changes, we are temporarily revoking
write access for all collaborators on this lesson:

• @lgatto (admin)
• @csoneson (admin)
• @kevinrue (maintain)
• @Kayla-Morrell (maintain)

If you no longer wish to have write access to this repository, you do not
need to do anything further.

1. What you can expect from the transition 📹: https://carpentries.github.io/workbench/beta-phase.html#beta
2. How to update your local clone 💻: https://carpentries.github.io/workbench/beta-phase.html#updating-clone
3. How to update (delete) your fork (if you have one) 📹: https://carpentries.github.io/workbench/faq.html#update-fork-from-styles

If you wish to regain write access, please re-clone the repository on your machine and
then comment here with I am ready for write access :rocket: and the
admin maintainer of this repository will restore your permissions.

If you have any questions, please reply here and tag @zkamvar

[zkamvar]

The deed is done. @csoneson, the infrastructure takes a few minutes to bootstrap and cache the packages for the lesson build). Once the build is done, I will switch github pages to deploy from the gh-pages branch and you will have your workbench lesson.

Thank you all for your enthusiasm and your patience!

[zkamvar]

The Workbench version is now live: https://carpentries-incubator.github.io/bioc-project/

In addition, here is map of commits that were changed during the transition