where2test

EUvsVirus hackathon project repository

Usage

To execute the shiny app locally

R -e "shiny::runApp('where2test')"

from the parent directory

To use the python code independently

python test.py <input-GeoJSON-file> <output-GeoJSON-file>

The output file can be visualized using http://geojson.io/

Dependencies in R

shiny
covid19
incidence
ggplot2
dplyr

Dependencies in python

PyGeoj 1.0.0 (https://pypi.org/project/PyGeoj/)
PyGMO 2 (https://github.com/esa/pygmo2)

Status of python code

Can read a GeoJSON file (Currently testing with the geojson file provided here : https://npgeo-corona-npgeo-de.hub.arcgis.com/datasets/917fc37a709542548cc3be077a786c17_0)
Runs an optimizer (Need to correctly define the objective function and constraints)
Output a GeoJSON file with the optimized quantity as an attribute