IBL widefield Conversion Project Progress

[alessandratrapani]

IBL widefield Conversion Project Progress

Pre-Conversion

• Repo Setup
• Initial Inspection and Notes: Delineation of Projects, Experiments and Data Streams
• Identify and request missing data/metadata/READMEs
• Acquire all data needed for conversion

Conversion

Reference paper with similar experimental setup

Behavior

• Wheel data
• Passive task data
• BWM trials data
• Raw behavioral video

Raw calcium imaging

• Raw output (.mov files) (two channels) Add Widefield raw imaging #4
• NIDQ data Add NIDQ to raw conversion #7

Processed calcium imaging

• ROIs detection (SVD spatial and temporal components) Add Widefield processed data #3
• hemo corrected and uncorrected traces Add Widefield processed data #3
• Summary images Add Widefield processed data #3
• Landmarks Add landmarks #13

Temporal Alignment

• Align raw imaging timestamps Add Widefield raw imaging #4

Post-Conversion

• Setup Dandiset
• Inspection/Validation
• README/Documentation
• Example Notebooks
• Final Meeting

[weiglszonja]

Landmarks references

• https://github.com/jcouto/wfield
• https://docs.internationalbrainlab.org/notebooks_external/loading_widefield_data.html
• https://github.com/jcouto/wfield/blob/master/notebooks/match_dorsal_cortex_to_the_allen.ipynb