Schneider Lab Conversion Progress #1
Description
Schneider Lab Conversion Progress
315/330 hrs
Pre-Conversion
- Repo Setup
- Initial Inspection and Notes: Delineation of Projects, Experiments and Data Streams: notes
- Identify and request missing data/metadata/READMEs
- Acquire all data needed for conversion
Conversion
Project 1: Behavior + Ephys + Ogen (Grant Zempolich)
- Convert all sessions: Full Dataset #12
Behavior
- MatBehavior Interface: Prototype Behavior Interface #3, Add more detailed descriptions for various metadata fields #7, Update behavior #8
- Video Interface: Video #4
Ephys
Ogen
- OptogeneticInterface: Opto #9
Intrinsic Signal Imaging
- IntrinsicSignalImagingInterface: Intrinsic signal imaging #10
Temporal Alignment
- Align ephys, behavior, and video: Temporal Alignment #19
Project 2: SLEAP Behavior + WhiteMatter Ephys + Audio Playback (Ariadna Corredera)
Behavior
- VideoInterface: Initial Setup of Corredera Conversion and AudioInterface #26
- AudioInterface: Initial Setup of Corredera Conversion and AudioInterface #26
- SLEAPInterface: Sleap #29
Stimulus
- Audio Stimulus: Audio Stimulus #27
- Visual Stimulus: Visual stimulus #30
Ephys
- WhiteMatter RecordingExtractor: WhiteMatterRecordingExtractor SpikeInterface/spikeinterface#3849
- WhiteMatter RecordingInterface in neuroconv: WhiteMatter neuroconv#1297
- WhiteMatter RecordingInterface: Whitematter and Sorting #28
- Phy/Kilosort Interface: Whitematter and Sorting #28
Temporal Alignment
- Align ephys, behavior, audio, and video: Temporal alignment #35
Project 3: VR Behavior + Ephys + DLC (Alessandro La Chioma)
Data Received
- Raw ephys (OpenEphys binary format)
- Processed behavior (speed, position of the wheel)
- Phy/Kilosort output
- Video
- DLC Live output -> not in the established format
- Virmen output
Behavior
- Add processed behavioral data (speed, position of the wheel) Alessandro La Chioma Project Data - Processed behavior #37
- Adapt BehaviorInterface to VR paradigm
- Adapt VideoInterface as necessary
- DLC Interface (?)
Ephys #33
- Adapt OpenEphys Interface as necessary
- Adapt Phy/Kilosort Interface as necessary
Temporal Alignment
- Align ephys, behavior, and video
Project 4: ndx-sound
- Community discussion: Concept Draft penalab/ndx-auditory#1
- Update ndx-sound: Update ndx-sound ndx-sound#11
- Incorporate updated ndx-sound
Post-Conversion
- Setup Dandiset(s): #001259
- Inspection/Validation
- README/Documentation: Documentation #15
- Example Notebooks: Example Notebooks for 001259 dandi/example-notebooks#106, Added example notebook #39
- Streamline dependencies between projects: Organize Dependencies #34
- Final Meeting