Update README.md

fixing repo names capitalizations

Author: anaistrate

software-mentions-linker-disambiguator/README.md

@@ -1,8 +1,8 @@
 # Software Mentions Linking + Disambiguation
 
 The goal of this project is to produce a high quality dataset of software used in the biomedical literature to facilitate analysis of adoption and impact of open-source scientific software. Our overall methodology is the following:
-1. Extract plain-text software mentions from the PMC-OA access using an [NER Machine Learning Algorithm](https://github.com/chanzuckerberg/software-mention-extraction) (developed by Ivana Williams)
-2. Link the software mentions to repositories and generate metadata by querying a number of databases. We link mentions to: PyPI, Bioconductor, CRAN, Scicrunch and Github
+1. Extract plain-text software mentions from the PMC-OA access using an [NER Machine Learning Algorithm](https://github.com/chanzuckerberg/software-mention-extraction) (developed by Ivana Williams) G
+2. Link the software mentions to repositories and generate metadata by querying a number of databases. We link mentions to: PyPI, Bioconductor, CRAN, SciCrunch and GitHub
 3. Disambiguate the software mentions
 
 More detailed descriptions of the **[linking](#linking)** and **[disambiguation](#disambiguation)** steps can be found below, together with instructions on how to run the code.
@@ -14,11 +14,11 @@ More detailed descriptions of the **[linking](#linking)** and **[disambiguation]
 
 ## Linking Task description ##
 1. We query the following databases, searching for exact matches for plain text sofware mentions in our dataset:
-- pypi Index: https://pypi.org/simple/
+- PyPI Index: https://pypi.org/simple/
 - Bioconductor Index: https://www.bioconductor.org/packages/release/bioc/
 - CRAN Index: https://cran.r-project.org/web/packages/available_packages_by_name.html
-- Github API: https://github.com
-- Scicrunch API: https://scicrunch.org/resources
+- GitHub API: https://github.com
+- SciCrunch API: https://scicrunch.org/resources
 
 2. We normalize the metadata files to a [common schema](#linking-schema).
 ### Linking Schema
@@ -29,15 +29,15 @@ Metadata files are normalized to the following fields:
 | ID | unique ID of software mention (generated by us) |
 | software_mention | plain-text software mention |
 | mapped_to | value the software_mention is being mapped to |
-| source | source of the mapping - eg Bioconductor Index, Github API|
-| platform | platform of software_mention - eg pypi, CRAN |
+| source | source of the mapping - eg Bioconductor Index, GitHub API|
+| platform | platform of software_mention - eg PyPI, CRAN |
 | package_url | URL linking software_mention to source |
 | description | description of software_mention |
 | homepage_url | homepage_url of software_mention|
 | other_urls |other related URLs |
 | license | software license |
-| github_repo | Github repository |
-| github_repo_license | Github repository license |
+| github_repo | GitHub repository |
+| github_repo_license | GitHub repository license |
 | exact_match | whether or not this mapping was an exact match |
 | RRID | RRID for software_mention |
 | reference | journal articles linked to software_mention (identified either through DOI, pmid or RRID)|