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New output parameter for GATK DepthOfCoverage #132

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mark-welsh opened this issue Dec 26, 2019 · 0 comments
Open

New output parameter for GATK DepthOfCoverage #132

mark-welsh opened this issue Dec 26, 2019 · 0 comments
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For UI issues

  • Tool: DepthOfCoverage
  • Version: v1.2.0

Description

When adding -baseCounts as a userString to the DepthOfCoverage, the output will be written to the "output_base_filename" filename. Some workflows require this output.

Proposal

Make an optional output for output_base_filename
@mark-welsh mark-welsh self-assigned this Dec 26, 2019
mark-welsh added a commit that referenced this issue Dec 26, 2019
@mark-welsh
[refs #132] Adds optional output
329b1bb
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