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Copy file name to clipboardExpand all lines: README.md
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Note: Once you have set up VIVA, you can quickly run the command line tool [EXAMPLES](https://compbiocore.github.io/VariantVisualization.jl/latest/examples/) found in the documentation.
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## Installation
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### Supported Operating Systems:
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### Command Line Tool
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1. Add VariantVisualization.jl using Pkg in the Julia REPL:
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a. Open the Julia REPL by typing `julia` into the command line
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b. Enter the Pkg manager by entering ']' into the REPL
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c. Enter `add VariantVisualization` in the Pkg manager. This will install all of VIVA's dependencies.
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1. Add VariantVisualization.jl using Pkg in the Julia REPL
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* Open the Julia REPL by typing `julia` into the command line
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* Enter the Pkg manager by entering `]` into the REPL
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* Enter `add VariantVisualization` in the Pkg manager. This will install all of VIVA's dependencies.
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2. Download the [VIVA](https://github.com/compbiocore/VariantVisualization.jl/blob/master/viva) tool script and save it to a working directory for your analysis.
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3. Navigate to your working directory and follow the [VIVA manual](https://compbiocore.github.io/VariantVisualization.jl/stable/) to generate your plots.
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### Jupyter Notebook
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1.[Install Jupyter](https://jupyter.org/install)
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2. Install the VariantVisualization.jl Julia package following the Command Line Tool installation instructions above.
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3. Download the [VIVA Jupyter Notebook](https://github.com/compbiocore/VariantVisualization.jl/blob/master/VIVA.ipynb).
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4. Open the VIVA Jupyter Notebook following the instructions in the [manual](https://compbiocore.github.io/VariantVisualization.jl/latest/).
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4. Follow the in-notebook instructions to generate your plots.
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