_pkgdown.yml

url: https://www.open-systems-pharmacology.org/TLF-Library/

template:
  bootstrap: 5

development:
  mode: devel


reference:
- title: "Atom Plots"
  desc: "Functions for creating base plots"
  contents:
  - has_concept("atom plots")
- title: "Molecule Plots"
  desc: "Functions for creating advanced plots"
  contents:
  - has_concept("molecule plots")
- title: "Updating Plots"
  desc: "Functions for updating plot properties"
  contents:
  - starts_with("setBackground")
  - starts_with("setCaption")
  - starts_with("setLegend")
  - starts_with("setPlot")
  - starts_with("setX")
  - starts_with("setY")
  - matches("setGrid")
  - matches("addWatermark")
  - matches("createWatermarkGrob")
  - matches("setWatermark")
  - starts_with("update")
  - starts_with("get")
  - matches("geomTLFPoint")
- title: "PlotConfiguration Classes"
  desc: "Classes defining plot properties"
  contents:
  - has_concept("PlotConfiguration classes")
  - ends_with("Label")
  - matches("Font")
- title: "DataMapping Classes"
  desc: "Classes defining what data to plot"
  contents:
  - has_concept("DataMapping classes")
  - matches("getLinesFromFoldDistance")
- title: "Summary and Aggregation Helpers"
  desc: "Classes, functions and objects summarizing data"
  contents:
  - has_concept("stat functions")
  - starts_with("Aggregation")
  - ends_with("Measure")
  - matches("isBetween")
  - starts_with("getGuestValues")
- title: "Enum Helpers"
  desc: "Enums listing available values for specific properties"
  contents:
  - has_concept("enum helpers")
- title: "Shiny Apps"
  desc: "Shiny applications"
  contents:
  - has_concept("shiny apps")
- title: "Themes"
  desc: "Functions and classes defining default plot properties."
  contents:
  - ends_with("Theme")
  - starts_with("Theme")
  - matches("saveThemeToJson")
  - matches("loadThemeFromJson")
  - matches("runThemeMaker")
- title: "Default Settings"
  desc: "Functions defining default package settings."
  contents:
  - starts_with("setDefault")
  - starts_with("getDefault")
- title: "Exporting Plots"
  desc: "Functions for saving and exporting plots."
  contents:
  - starts_with("export")

navbar:
  components:
    articles:
      text: Articles
      menu:
      - text: "Primary Plots"
      - text: Atom Plots
        href: atom-plots
      - text: Box-Whisker Plots
        href: box-whisker-vignette
      - text: Histogram Plots
        href: histogram
      - text: PK Ratio Plots
        href: pk-ratio-vignette
      - text: Time Profile Plots
        href: plot-time-profile
      - text: ——–
      - text: "Plot configuration"
      - text: Introduction to PlotConfiguration objects
        href: plot-configuration
      - text: ——–
      - text: "Shiny apps"
      - text: Run Shiny App to Create Plots
        href: plot-maker
      - text: Run Shiny App to Create Themes
        href: theme-maker